Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5596 176 5e-39 seq8700 113 5e-20 seq29385 104 3e-17 >seq5596 Length=16775 Score = 176 bits (194), Expect = 5e-39 Identities = 457/684 (67%), Gaps = 22/684 (3%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||| |||||||| |||||||| || |||||||| ||||| || || ||| || Sbjct 12319 GAGACAGGAACACCTTATATGCTGTATAAGGATGCATGTAATCGTAAATCGAATCAACAG 12260 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | ||||||||| |||||||| | || || |||||| | | || || ||| Sbjct 12259 AATCTTGGAACAATCCGTTGCTCAAATTTATGTACTGAAATTGTCCAATATTCAAGTAAA 12200 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||| ||||| || ||||| |||||||| ||| | | || |||||| | | Sbjct 12199 GATGAAGTTGCTGTCTGTAATTTAGCATCAATTGCCTTAAATATGTTTGTCAAGCCAAA- 12141 Query 76085 ACTCGCACT---TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAAT 76141 ||| | | ||||| | ||| | | ||| |||||||||| || || | |||| Sbjct 12140 --TCGTAAAGAATATGATTTCCATAAATTGAAGGAAGTCACAAAGATAGTCACAAGAAAT 12083 Query 76142 CTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGA-GACTGCGCGAAAG--TCTAAT 76198 |||| | | ||||| ||||| ||||| ||||| || || ||| || || Sbjct 12082 TTAAATAAAATTATTGAAGTTAATTTCTATCCAGTTGAAGAA---GCTAAACGATCAAAC 12026 Query 76199 ATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TG 76257 | |||| | || || || | || ||||||| | || |||| ||||| ||| || Sbjct 12025 TTTAGACATCGTCCAATCGGAATTGGAATTCAAGGATTAGCTGATGCCTTTATATTGATG 11966 Query 76258 CCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCAT 76317 | | ||| || || |||||||| || | ||| | || ||||| || || Sbjct 11965 AGAATGC-CATACGAGTCTGATGAAGCTAAATTATTAAATCAACAAATATTTGAGACAAT 11907 Query 76318 GTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGAC 76377 ||| | | | | | ||| |||| ||||||||||||||| | || | |||||||| Sbjct 11906 TTATTATGGAGCTTTAGAGTCGAGCTGTGAATTGGCTGAAAAACTTGGAACTTATGAGAC 11847 Query 76378 ATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAAC 76437 | ||| || | ||| | || |||| | | || | ||||||||||||| || || Sbjct 11846 GTATGAAGGATGTCCAGTATCAAAAGGTATATTACAATATGATATGTGGGAAAA-GACAC 11788 Query 76438 CAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 76495 ||| || | | | | ||||| | | || ||| |||||| | ||||||||| Sbjct 11787 CAA-CTGACTTGTGGGATTGGGAAGCATTAAAAGAAAAAATCAAGAATTTTGGTCTTCGT 11729 Query 76496 AA--CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 76553 || || | || | | |||||||||||||| || || || || || || || ||||||| Sbjct 11728 AATTCATTGTTATTA--GCACCAATGCCAACTGCATCAACAGCTCAGATTTTAGGTAATA 11671 Query 76554 ATGAATGCTTTGAACCATACACAA 76577 |||| | |||||||| ||||||| Sbjct 11670 ATGAGAGTTTTGAACCGTACACAA 11647 >seq8700 Length=5779 Score = 113 bits (124), Expect = 5e-20 Identities = 294/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 177529 ATCTCCTTTCCAACCTCTTTGAAGCACATTTCAACAAACTGCCTCACAGAGTGTGTCTCC 177588 || |||||||||| | | | || | ||| ||||||| | ||| | | ||||| Sbjct 352 ATTTCCTTTCCAATATGTCTAAATGAAGCTTCGACAAACTCTCGAACACTGCGAGTCTCT 411 Query 177589 CCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCA 177648 || || || | ||| | || || | | || || || | ||| | |||||| ||||| Sbjct 412 CCTGTAGCAATTACAAAGTCTTCTGGTTTATCCTGCTGTAACATCATCCACATAGCTTCT 471 Query 177649 ACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAAC 177708 || |||||||| ||||||||||| || | | | || ||||| ||||| | ||| Sbjct 472 ACGTAGTCCTTAGCATGACCCCAATCACGTTTTGAATCAAGATTACCAAGTTCCAAGAAT 531 Query 177709 TCTCTCTCACCTTTCACAATTTGTTTGACGCC--ATCAG-TAATCTTCTTTGTGACAAAG 177765 ||| | | ||| | | | || | || | ||| | | || || ||| || || Sbjct 532 TCTTGTTGA--TTTAATGAAATTTTAG-CGACTGATCTGGTGATTTTTCGTGTCACGAAA 588 Query 177766 TCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCA 177825 | |||||| ||| || ||||| || || || | || || || ||||||||||| Sbjct 589 TTCTCACCTCTTCTTGGCGATTCATGATTAAATAAAATACCATTACATGCATACATACCG 648 Query 177826 TAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATA--GA 177883 |||| ||| |||||||| | | || ||||| | |||||| | || |||| || Sbjct 649 TAGGCTTCACGGTAATTAATAATGATCCAGTAGCCATACAATTTAGCAACTGCATATGGA 708 Query 177884 CGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACA 177943 | || ||| || || ||||||| |||||||| |||||||| ||||| ||| ||| Sbjct 709 C--TTCTTGGATAAAATGGTGTCTTTTCAGTTTGAGGAGTTTCCACAACTTTTCCATACA 766 Query 177944 TCTCCGAAGTTGAGGCTTGGTA 177965 || || ||||| ||||| || Sbjct 767 ATTCTGATGTTGATGCTTGATA 788 >seq29385 Length=2825 Score = 104 bits (114), Expect = 3e-17 Identities = 249/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || ||||| || || || || || || ||||| | ||||||||||| Sbjct 762 CCTGGTACTGGTAAAACCCTTCTTGCTCGTGCAATTGCTGGTGAGGCTAATGTCCCATT- 820 Query 175375 ATCCAGT-GCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | ||| |||| | | | ||||| || ||||||||||| |||||||| | | || Sbjct 821 TTTTAGTATTTCTGGCTCCGATTTTGTTGAAATGTTTGTTGGGGTGGGTGCAAGTCGTGT 880 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||| | ||||| | ||||| || || || | || || ||||| || Sbjct 881 ACGTGATATGTTTGATCAAGGTAAGAAAAATGCTCCTTGCATAATTTTTATAGATGAAAT 940 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAAC 175552 ||||| || || | ||| || | |||| || | | ||||| |||||||| | Sbjct 941 AGATGCTGTAGGTAGGCATCGTGGAATTGGT-TTAGGTGGTGGTAATGATGAGAGAGAGC 999 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATGAGACTGGCATTG 175609 ||||| | ||||| ||| | || |||||||||||||| ||||| ||| | Sbjct 1000 AAACATTAAATCAGCTATTAGTTGAAATGGATGGCTTTGAATCTAATGA---AGGCGTGA 1056 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | | ||||| || |||||||| | ||| | | ||| | || || ||| | || |||| Sbjct 1057 TAATAATTGCTGCAACTAATCGTGCAGATGTTTTAGATAAAGCACTACTTAGACCTGGTC 1116 Query 175670 GTTTTGATCG 175679 | |||||||| Sbjct 1117 GATTTGATCG 1126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596348295049760