Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq7918 264 8e-66 >seq7918 Length=32631 Score = 264 bits (292), Expect = 8e-66 Identities = 672/1019 (66%), Gaps = 40/1019 (4%) Strand=Plus/Minus Query 10951 ACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTACGACCAACAGAA 11010 ||| || |||||| | || ||||||||| | || || ||| ||||||| || |||||||| Sbjct 16066 ACTCAAAGAGCCGCTATTTTTCGGCCAACCGGTGAATGTAGCCCGTTATGATCAACAGAA 16007 Query 11011 ACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGA 11070 | || |||||||| ||| | | || || || || || || ||||| || ||||| Sbjct 16006 ATATCCGATTTTTGAGCGGTTAATTGAAAAACAGCTCTCTTTTTTTTGGCGCCCAGAAGA 15947 Query 11071 AGTTGATGTGTCACAAGACCGAATCGACTACAGTAAAATGACTGATGCGGAGAAACACAT 11130 |||||||| || | || || ||||||||| | | || | || | || || Sbjct 15946 GGTTGATGTCTCGCGTGATCGCATCGACTACCAGCAGCTACCTCCTCATGAACAGCATAT 15887 Query 11131 CTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAA 11190 || ||||| || || || |||||||| | || || ||||| ||||| || ||||| || Sbjct 15886 TTTTATTAGCAATCTAAAATACCAAACCCTGCTGGATTCGATTCAAGGGCGCAGCCCTAA 15827 Query 11191 TATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAG 11250 | | || || | || | || ||||| ||||| | ||||| ||| | ||||| ||| Sbjct 15826 TGTCGCTTTTTTACCCCTGGTCTCACTGCCAGAGCTTGAAACCTGGATCGAAACTTGGGC 15767 Query 11251 CTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGA 11310 ||| |||||||| ||||| ||||| || || |||||||||||||||||||||||||| Sbjct 15766 CTTTTCAGAAACCATTCACTCCCGTTCCTATACTCACATCATTCGCAATATTGTCAATGA 15707 Query 11311 CCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCCTAGAGCGAGCTAAAGA 11370 ||| | | | || | ||| | | ||| || | ||||| | || || || || Sbjct 15706 TCCTGATGTCATCTTTAAGGATATCATGCTCAATCAGGAGATCCTGAAACGTGCCAACGA 15647 Query 11371 TATTGCTCGTTACTACGACGATCTCATCTTGGC---ATGCA-----AAG-----AGCATG 11417 |||||| | |||||| || || || ||| ||| || || || || || Sbjct 15646 TATTGCGCATTACTATGATGAGCTGATCGAGGCCCTATACAGCTACCAGCTGTTAGGATT 15587 Query 11418 AGCTAAACGGCAAACA--------------------CACAATGCGCGACCTAAAGAAAAA 11457 | || | |||| | || | || || | || ||||| Sbjct 15586 TGGTACGCACCAAATAGGTACTAAAACCTTGAACATCAGCCTACGGGAGTTGAAAAAAAA 15527 Query 11458 GTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTT 11517 | | || | || | ||| ||| ||||| || || || | || ||||| || ||||| Sbjct 15526 GCTCTATCTCTGTTTAATGAGTGTCAATGTCTTGGAGGCCATCCGCTTCTATGTCAGTTT 15467 Query 11518 CGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAA 11577 || || || ||||| || ||||||||| | | ||||| || ||||| || | ||||| Sbjct 15466 TGCCTGCTCCTTTGCCTTTGCTGAACGCAAATTAATGGAGGGCAATGCCAAGTTGATCAA 15407 Query 11578 GCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACATGCTGAAGAT-GT 11636 | ||||| || |||||||| |||||| | ||||| ||||| | || | || | Sbjct 15406 ATTGATTGCCCGGGATGAAGCGCTACACTTAGTGGGTACCCAGCATCTACTCAGTATCAT 15347 Query 11637 GGAACAACGGCAC-CGATGATATGGAAATGGCTTCTATCGCACATGAGTGTCGCGAAGAG 11695 || | ||| || ||||||| |||||||| | |||| |||||||| | || Sbjct 15346 GG--CTGCGGGACAAGATGATAGCGAAATGGCGGAGGTAGCACGGGAGTGTCGGGCGGAA 15289 Query 11696 TCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGACTGGGCAAACTATCTATTC 11755 | | || |||| | ||| | ||| || ||||| |||||| ||||||||| Sbjct 15288 GCTGAAGCCATCTTCATCACGGCGGCGACACAGGAAAAAGAGTGGGCAGCCTATCTATTT 15229 Query 11756 AAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTGAATATGTTGAGTACATC 11815 ||| || |||||||| || ||| || ||| ||||| ||||||| || ||||| Sbjct 15228 AAATCGGGCTCCATGATCGGTCTCAACCGCGAGATTTTATGTCAATATGTGGACTACATT 15169 Query 11816 ACAAGCCACCGAATGAAGTATGTCGGGCT-ACCTCCGCTAC-ACCCGG-AAGCAACTAAC 11872 ||| | || ||| || ||||| || || || || | | ||| || | ||| Sbjct 15168 ACACATCTGCGTATGCAGGCAGTCGGCCTGACACCCCCTTCTTCTCGGCAACGCTCCAAC 15109 Query 11873 CCAATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTGCTCCACAGGA 11931 || | || |||||||||| |||| | | ||||| ||||| || || || || || Sbjct 15108 CCGCTGCCTTGGATCAACAGCTGGCTCAGTTCCGATAACGTTCAGGTGGCACCTCAAGA 15050 Score = 190 bits (210), Expect = 1e-43 Identities = 286/404 (71%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 9243 AAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCT 9302 |||| || || || || || || ||| | ||||||||||| || ||||| ||||| |||| Sbjct 18450 AAATTTCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGCT 18391 Query 9303 CATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCAGGCGCAA 9362 | || || |||||| | | ||||| || | || |||||||| || | | || | Sbjct 18390 CTTGTGTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCGCCAGTGCCA 18331 Query 9363 TCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCAT 9422 | |||| ||||| || || ||||| |||||||| ||||| || || ||||| || | Sbjct 18330 TTGTGAAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCCT 18271 Query 9423 TAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAAC 9482 |||| ||||| || ||||| || | ||||| || ||||| || || ||||||| Sbjct 18270 TAGGCAGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTACAAAC 18211 Query 9483 ACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGG 9542 | ||||||||||| || |||| || |||||||||||| || || || || || || Sbjct 18210 ATTTCCAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTACCC 18151 Query 9543 TATTCTACCCAATGTGGCACCTAG-AGTACAAATCACTAATCGTACTCAAGAACAACCGT 9601 | ||||| || | ||||| | | |||| || | || | || | || ||||| || Sbjct 18150 TCTTCTATCCGCTATGGCATCGCGAAGTA-GAAGCCCTGTTAGTGTTAAAAAACAATCGG 18092 Query 9602 GGTATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACA 9645 || | || ||||| || ||||| ||| |||| || || ||||| Sbjct 18091 GGCGTTGAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACA 18048 Score = 113 bits (124), Expect = 3e-20 Identities = 215/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 10529 AACGGCATCGAACCACCTCGTGGCTACATGTCAGTTAAGCAGTCGAAGGATGGCATCTTA 10588 || |||||||| ||||| || ||||| || || || || ||||||||||||||| Sbjct 16712 AATGGCATCGAGCCACCGCGAGGCTATATCAGCGTAAAAGCTTCCAAGGATGGCATCTTA 16653 Query 10589 AAACAAATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTACTATGGAATATC 10648 ||||| | || || | ||||| ||| || || ||||| |||||| | || Sbjct 16652 AAACAGGTTGTCCCTGAGTATGAACGGCTGAAAACACAGTATGAGTTGCTATGGCAGATT 16593 Query 10649 AAAGACAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCT 10708 | |||| ||| || ||| ||||||||||| | ||||| || ||||| ||||| || Sbjct 16592 CCTAATAACAGTGGCTATTTGCAATTGGTTGCCGTGATGCAAAAATTTGTCGATCAAGCG 16533 Query 10709 ATTTCAGCAAACACTAACTACGACCCAGAAAACTACCCAGAAAGTAAGGTTCCAATCAAA 10768 || || || || |||| || || || | ||| || | |||||| || || ||| Sbjct 16532 ATCTCTGCCAATACTAGTTATGATCCGACCCGTTTCCCTGATAATAAGGTCCCTATGAAA 16473 Query 10769 AAGTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACACTGTACTACCAC 10828 || | ||| ||| | |||| ||| |||| || | || || ||||| || ||| Sbjct 16472 CAGCTGTTGGCCGATCTATTGACCGCCTATCGACTGGGGCTGAAAACTCTGTATTATCAC 16413 Query 10829 AACACACGAGATGGTGC 10845 || || || ||||| || Sbjct 16412 AATACCCGGGATGGGGC 16396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342848750703863