Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_021073.1
Length=107218
Score E
Sequences producing significant alignments: (Bits) Value
seq7918 264 8e-66
>seq7918
Length=32631
Score = 264 bits (292), Expect = 8e-66
Identities = 672/1019 (66%), Gaps = 40/1019 (4%)
Strand=Plus/Minus
Query 10951 ACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTACGACCAACAGAA 11010
||| || |||||| | || ||||||||| | || || ||| ||||||| || ||||||||
Sbjct 16066 ACTCAAAGAGCCGCTATTTTTCGGCCAACCGGTGAATGTAGCCCGTTATGATCAACAGAA 16007
Query 11011 ACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGA 11070
| || |||||||| ||| | | || || || || || || ||||| || |||||
Sbjct 16006 ATATCCGATTTTTGAGCGGTTAATTGAAAAACAGCTCTCTTTTTTTTGGCGCCCAGAAGA 15947
Query 11071 AGTTGATGTGTCACAAGACCGAATCGACTACAGTAAAATGACTGATGCGGAGAAACACAT 11130
|||||||| || | || || ||||||||| | | || | || | || ||
Sbjct 15946 GGTTGATGTCTCGCGTGATCGCATCGACTACCAGCAGCTACCTCCTCATGAACAGCATAT 15887
Query 11131 CTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAA 11190
|| ||||| || || || |||||||| | || || ||||| ||||| || ||||| ||
Sbjct 15886 TTTTATTAGCAATCTAAAATACCAAACCCTGCTGGATTCGATTCAAGGGCGCAGCCCTAA 15827
Query 11191 TATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAG 11250
| | || || | || | || ||||| ||||| | ||||| ||| | ||||| |||
Sbjct 15826 TGTCGCTTTTTTACCCCTGGTCTCACTGCCAGAGCTTGAAACCTGGATCGAAACTTGGGC 15767
Query 11251 CTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGA 11310
||| |||||||| ||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 15766 CTTTTCAGAAACCATTCACTCCCGTTCCTATACTCACATCATTCGCAATATTGTCAATGA 15707
Query 11311 CCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCCTAGAGCGAGCTAAAGA 11370
||| | | | || | ||| | | ||| || | ||||| | || || || ||
Sbjct 15706 TCCTGATGTCATCTTTAAGGATATCATGCTCAATCAGGAGATCCTGAAACGTGCCAACGA 15647
Query 11371 TATTGCTCGTTACTACGACGATCTCATCTTGGC---ATGCA-----AAG-----AGCATG 11417
|||||| | |||||| || || || ||| ||| || || || || ||
Sbjct 15646 TATTGCGCATTACTATGATGAGCTGATCGAGGCCCTATACAGCTACCAGCTGTTAGGATT 15587
Query 11418 AGCTAAACGGCAAACA--------------------CACAATGCGCGACCTAAAGAAAAA 11457
| || | |||| | || | || || | || |||||
Sbjct 15586 TGGTACGCACCAAATAGGTACTAAAACCTTGAACATCAGCCTACGGGAGTTGAAAAAAAA 15527
Query 11458 GTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTT 11517
| | || | || | ||| ||| ||||| || || || | || ||||| || |||||
Sbjct 15526 GCTCTATCTCTGTTTAATGAGTGTCAATGTCTTGGAGGCCATCCGCTTCTATGTCAGTTT 15467
Query 11518 CGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAA 11577
|| || || ||||| || ||||||||| | | ||||| || ||||| || | |||||
Sbjct 15466 TGCCTGCTCCTTTGCCTTTGCTGAACGCAAATTAATGGAGGGCAATGCCAAGTTGATCAA 15407
Query 11578 GCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACATGCTGAAGAT-GT 11636
| ||||| || |||||||| |||||| | ||||| ||||| | || | || |
Sbjct 15406 ATTGATTGCCCGGGATGAAGCGCTACACTTAGTGGGTACCCAGCATCTACTCAGTATCAT 15347
Query 11637 GGAACAACGGCAC-CGATGATATGGAAATGGCTTCTATCGCACATGAGTGTCGCGAAGAG 11695
|| | ||| || ||||||| |||||||| | |||| |||||||| | ||
Sbjct 15346 GG--CTGCGGGACAAGATGATAGCGAAATGGCGGAGGTAGCACGGGAGTGTCGGGCGGAA 15289
Query 11696 TCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGACTGGGCAAACTATCTATTC 11755
| | || |||| | ||| | ||| || ||||| |||||| |||||||||
Sbjct 15288 GCTGAAGCCATCTTCATCACGGCGGCGACACAGGAAAAAGAGTGGGCAGCCTATCTATTT 15229
Query 11756 AAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTGAATATGTTGAGTACATC 11815
||| || |||||||| || ||| || ||| ||||| ||||||| || |||||
Sbjct 15228 AAATCGGGCTCCATGATCGGTCTCAACCGCGAGATTTTATGTCAATATGTGGACTACATT 15169
Query 11816 ACAAGCCACCGAATGAAGTATGTCGGGCT-ACCTCCGCTAC-ACCCGG-AAGCAACTAAC 11872
||| | || ||| || ||||| || || || || | | ||| || | |||
Sbjct 15168 ACACATCTGCGTATGCAGGCAGTCGGCCTGACACCCCCTTCTTCTCGGCAACGCTCCAAC 15109
Query 11873 CCAATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTGCTCCACAGGA 11931
|| | || |||||||||| |||| | | ||||| ||||| || || || || ||
Sbjct 15108 CCGCTGCCTTGGATCAACAGCTGGCTCAGTTCCGATAACGTTCAGGTGGCACCTCAAGA 15050
Score = 190 bits (210), Expect = 1e-43
Identities = 286/404 (71%), Gaps = 2/404 (0%)
Strand=Plus/Minus
Query 9243 AAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCT 9302
|||| || || || || || || ||| | ||||||||||| || ||||| ||||| ||||
Sbjct 18450 AAATTTCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGCT 18391
Query 9303 CATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCAGGCGCAA 9362
| || || |||||| | | ||||| || | || |||||||| || | | || |
Sbjct 18390 CTTGTGTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCGCCAGTGCCA 18331
Query 9363 TCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCAT 9422
| |||| ||||| || || ||||| |||||||| ||||| || || ||||| || |
Sbjct 18330 TTGTGAAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCCT 18271
Query 9423 TAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAAC 9482
|||| ||||| || ||||| || | ||||| || ||||| || || |||||||
Sbjct 18270 TAGGCAGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTACAAAC 18211
Query 9483 ACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGG 9542
| ||||||||||| || |||| || |||||||||||| || || || || || ||
Sbjct 18210 ATTTCCAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTACCC 18151
Query 9543 TATTCTACCCAATGTGGCACCTAG-AGTACAAATCACTAATCGTACTCAAGAACAACCGT 9601
| ||||| || | ||||| | | |||| || | || | || | || ||||| ||
Sbjct 18150 TCTTCTATCCGCTATGGCATCGCGAAGTA-GAAGCCCTGTTAGTGTTAAAAAACAATCGG 18092
Query 9602 GGTATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACA 9645
|| | || ||||| || ||||| ||| |||| || || |||||
Sbjct 18091 GGCGTTGAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACA 18048
Score = 113 bits (124), Expect = 3e-20
Identities = 215/317 (68%), Gaps = 0/317 (0%)
Strand=Plus/Minus
Query 10529 AACGGCATCGAACCACCTCGTGGCTACATGTCAGTTAAGCAGTCGAAGGATGGCATCTTA 10588
|| |||||||| ||||| || ||||| || || || || |||||||||||||||
Sbjct 16712 AATGGCATCGAGCCACCGCGAGGCTATATCAGCGTAAAAGCTTCCAAGGATGGCATCTTA 16653
Query 10589 AAACAAATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTACTATGGAATATC 10648
||||| | || || | ||||| ||| || || ||||| |||||| | ||
Sbjct 16652 AAACAGGTTGTCCCTGAGTATGAACGGCTGAAAACACAGTATGAGTTGCTATGGCAGATT 16593
Query 10649 AAAGACAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCT 10708
| |||| ||| || ||| ||||||||||| | ||||| || ||||| ||||| ||
Sbjct 16592 CCTAATAACAGTGGCTATTTGCAATTGGTTGCCGTGATGCAAAAATTTGTCGATCAAGCG 16533
Query 10709 ATTTCAGCAAACACTAACTACGACCCAGAAAACTACCCAGAAAGTAAGGTTCCAATCAAA 10768
|| || || || |||| || || || | ||| || | |||||| || || |||
Sbjct 16532 ATCTCTGCCAATACTAGTTATGATCCGACCCGTTTCCCTGATAATAAGGTCCCTATGAAA 16473
Query 10769 AAGTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACACTGTACTACCAC 10828
|| | ||| ||| | |||| ||| |||| || | || || ||||| || |||
Sbjct 16472 CAGCTGTTGGCCGATCTATTGACCGCCTATCGACTGGGGCTGAAAACTCTGTATTATCAC 16413
Query 10829 AACACACGAGATGGTGC 10845
|| || || ||||| ||
Sbjct 16412 AATACCCGGGATGGGGC 16396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 342848750703863
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |