Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 136 7e-27
seq8363 132 9e-26
>seq3668
Length=32275
Score = 136 bits (150), Expect = 7e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | ||||| |||| ||||||||| | || || ||||| |||||
Sbjct 30903 ATACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCA 30844
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || | ||| || |||||||| || || || ||||| | |||||||| ||
Sbjct 30843 CTCAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGT 30784
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||||||||| ||||| || || | || | |||| ||||| || |||| ||||
Sbjct 30783 GGAATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCA 30724
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| | ||| || |||||||| |||| ||||| || || |||||||| ||
Sbjct 30723 ACTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATCTT 30671
>seq8363
Length=52898
Score = 132 bits (146), Expect = 9e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 193163 TGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCC 193222
||| | |||||| |||||| |||||| || || | ||| ||||||||||| ||
Sbjct 26358 TGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGTTTACC 26417
Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282
|||||| || |||| |||||||| ||||| ||||||||||||||||| ||||| | ||
Sbjct 26418 GGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTTAGCCTT 26477
Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342
| |||| ||| || || || | ||| ||||| || || || || ||||| || | ||
Sbjct 26478 AACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGT 26537
Query 193343 TTTTACAAATATTTGCAT 193360
||| || || || |||||
Sbjct 26538 TTTGACGAAGATCTGCAT 26555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899320661954640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |