Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9081 203 5e-47 seq8363 113 7e-20 >seq9081 Length=2203 Score = 203 bits (224), Expect = 5e-47 Identities = 546/833 (66%), Gaps = 6/833 (1%) Strand=Plus/Plus Query 17862 CTTTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || ||||| ||||| || || ||| || ||||| || ||||| || || | ||| ||| Sbjct 45 CTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATT 104 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 || | |||||| |||||||| |||| ||||| || || || |||||| | Sbjct 105 AATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCT 164 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 ||||| ||| ||||| ||||| | |||| ||||| ||||| |||||||| || | Sbjct 165 AATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAAC 224 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | | | || || || ||| | | |||||| || || |||| |||| |||| | || Sbjct 225 ATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATA 284 Query 18101 ATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACAC 18160 || | | || | |||||| || | ||| | || || || | ||| || Sbjct 285 ATTTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTGTAC---ATTAAGCAT 341 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||| ||| || | ||||| ||||| || || | ||| || || || || || Sbjct 342 GCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCT 401 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||||| || | || || | |||||| || | ||| || || | | |||||| || Sbjct 402 GGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATC 461 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTAT 18339 ||||| || ||| || || || || | || |||| |||| | | || || ||| Sbjct 462 CCCTCGACAGCA-GCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATAT 520 Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399 ||| ||| ||||| ||| | | | ||||||| | |||| |||||||| || Sbjct 521 CCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAA 580 Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459 || || | || | ||| |||||||| || |||| | || ||||| || Sbjct 581 TAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAATCGAGTACATCTC 640 Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTG 18519 || |||| |||||||||| || || || | |||||| ||| ||| || | ||| Sbjct 641 TGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTG 700 Query 18520 AATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAA 18579 || || | |||| ||| | || |||||||| || || ||||| | | || || Sbjct 701 AACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAA 760 Query 18580 AAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATC 18639 ||||| || || | | || || || ||| |||||| | || | ||| ||| Sbjct 761 GAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACT 820 Query 18640 TATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||||||||||||| ||| |||||||| |||||| || || ||| |||| Sbjct 821 CATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAGCCT 873 >seq8363 Length=52898 Score = 113 bits (124), Expect = 7e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| || || || ||||| | |||||||| || Sbjct 26555 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCG 26496 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| |||||||||||||| || |||||||| ||| Sbjct 26495 GACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 26436 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||||||||| || | || ||| | || || || || ||| Sbjct 26435 CAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACAAT 26376 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || ||||| |||||||| Sbjct 26375 ATTCAGAAAGAGTCAACACTTCACTTAGTGTT 26344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731600502933200