Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 304 3e-77
seq3668 174 3e-38
seq8363 145 2e-29
>seq9081
Length=2203
Score = 304 bits (336), Expect = 3e-77
Identities = 534/774 (69%), Gaps = 21/774 (3%)
Strand=Plus/Plus
Query 49580 TGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA 49639
||| ||||| | |||||| |||||||||||||||||||| || || | |||
Sbjct 98 TGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAA 157
Query 49640 TACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCAT 49699
| | |||||| ||||||||| ||||||| |||| |||||||| |||||||||||
Sbjct 158 TTCGCCTAATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCAT 217
Query 49700 ACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagctt 49758
||||| | || | ||| | ||| ||| |||| |||||| ||||| || | |||||| |
Sbjct 218 GCCCAACATCTTTACTGGAAGTGCGTCAGTCAA-AAATTCCTTTTCAATCTTTACAGCCT 276
Query 49759 gtttaattatcataattatattattttttgataatttatatttaatatgattcgcatata 49818
| | || || || | | ||||| | || | ||| ||| || || |
Sbjct 277 CTGTGATAATTTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTG---TACA 333
Query 49819 ttaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAG 49878
|||| |||||||| ||| ||| | || ||||| || || |||| |||||| || |
Sbjct 334 TTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATG 393
Query 49879 TTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAA 49938
| || |||||||||||||| | ||| |||| |||||| |||| |||||| || | | ||
Sbjct 394 TCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAA 453
Query 49939 AGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCAT 49998
|||| || ||||||||| ||||| || || | || | | ||||| || | | |
Sbjct 454 AGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTAC 513
Query 49999 CTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058
|||||||||||| ||||| ||||| ||||| || | | |||| | | || ||||
Sbjct 514 TGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAG 573
Query 50059 CTTTAAATAAT---TCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATA 50112
| || ||||| ||| | ||| ||| |||| |
Sbjct 574 CATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCA------ATTAGAA 627
Query 50113 AAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTG 50172
|| ||||| || || |||||| ||||||||| ||||| ||| |||||| || |
Sbjct 628 TCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAG 687
Query 50173 CTTCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231
|||||| |||| ||||||| | ||||||||||| ||| |||||| |||||| ||
Sbjct 688 CTTCTGT-TACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCG 746
Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291
|| ||||| || ||||||||||| |||| | ||||| || ||| ||| |||||
Sbjct 747 TCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAAT 806
Query 50292 TTTTCCCA-AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344
|||||||| | || | ||| ||||||||||| |||||||| | |||||| ||
Sbjct 807 TTTTCCCAGTCACTC-ATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859
>seq3668
Length=32275
Score = 174 bits (192), Expect = 3e-38
Identities = 183/241 (76%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358
||| |||||||||||| | |||||| | || ||||| || || | || || |||||
Sbjct 30911 GTTCAATAATACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATAT 30852
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
| || ||| ||||| ||| |||| ||||||||||||||||| |||||||| | ||||
Sbjct 30851 TGTAGTCACTCAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTT 30792
Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478
|||| ||||| ||||||||||| ||||| || || || ||||| |||| || |
Sbjct 30791 GATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAG 30732
Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
| | || ||||| | ||| ||||||||||||||||||||||| | || || ||||| |
Sbjct 30731 AAGGCTCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATCT 30672
Query 192539 T 192539
|
Sbjct 30671 T 30671
>seq8363
Length=52898
Score = 145 bits (160), Expect = 2e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||||| ||| || || ||||| || | || | |||||| ||||| || ||
Sbjct 26328 ACCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCT 26387
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||||| ||| |||| || ||||||||||| |||||||| |||| |||||||| || ||
Sbjct 26388 CAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGG 26447
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||||||||||||||| |||||| || ||||| || | || || | || ||
Sbjct 26448 AATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGAC 26507
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| || ||||| || ||||| || || ||||| | || ||||||||
Sbjct 26508 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984105664708950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |