Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9081 304 3e-77 seq3668 174 3e-38 seq8363 145 2e-29 >seq9081 Length=2203 Score = 304 bits (336), Expect = 3e-77 Identities = 534/774 (69%), Gaps = 21/774 (3%) Strand=Plus/Plus Query 49580 TGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA 49639 ||| ||||| | |||||| |||||||||||||||||||| || || | ||| Sbjct 98 TGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAA 157 Query 49640 TACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCAT 49699 | | |||||| ||||||||| ||||||| |||| |||||||| ||||||||||| Sbjct 158 TTCGCCTAATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCAT 217 Query 49700 ACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagctt 49758 ||||| | || | ||| | ||| ||| |||| |||||| ||||| || | |||||| | Sbjct 218 GCCCAACATCTTTACTGGAAGTGCGTCAGTCAA-AAATTCCTTTTCAATCTTTACAGCCT 276 Query 49759 gtttaattatcataattatattattttttgataatttatatttaatatgattcgcatata 49818 | | || || || | | ||||| | || | ||| ||| || || | Sbjct 277 CTGTGATAATTTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTG---TACA 333 Query 49819 ttaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAG 49878 |||| |||||||| ||| ||| | || ||||| || || |||| |||||| || | Sbjct 334 TTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATG 393 Query 49879 TTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAA 49938 | || |||||||||||||| | ||| |||| |||||| |||| |||||| || | | || Sbjct 394 TCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAA 453 Query 49939 AGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCAT 49998 |||| || ||||||||| ||||| || || | || | | ||||| || | | | Sbjct 454 AGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTAC 513 Query 49999 CTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058 |||||||||||| ||||| ||||| ||||| || | | |||| | | || |||| Sbjct 514 TGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAG 573 Query 50059 CTTTAAATAAT---TCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATA 50112 | || ||||| ||| | ||| ||| |||| | Sbjct 574 CATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCA------ATTAGAA 627 Query 50113 AAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTG 50172 || ||||| || || |||||| ||||||||| ||||| ||| |||||| || | Sbjct 628 TCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAG 687 Query 50173 CTTCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231 |||||| |||| ||||||| | ||||||||||| ||| |||||| |||||| || Sbjct 688 CTTCTGT-TACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCG 746 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 || ||||| || ||||||||||| |||| | ||||| || ||| ||| ||||| Sbjct 747 TCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAAT 806 Query 50292 TTTTCCCA-AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344 |||||||| | || | ||| ||||||||||| |||||||| | |||||| || Sbjct 807 TTTTCCCAGTCACTC-ATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859 >seq3668 Length=32275 Score = 174 bits (192), Expect = 3e-38 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||||||||| | |||||| | || ||||| || || | || || ||||| Sbjct 30911 GTTCAATAATACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATAT 30852 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||| ||||| ||| |||| ||||||||||||||||| |||||||| | |||| Sbjct 30851 TGTAGTCACTCAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTT 30792 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| ||||| ||||||||||| ||||| || || || ||||| |||| || | Sbjct 30791 GATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAG 30732 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || ||||| | ||| ||||||||||||||||||||||| | || || ||||| | Sbjct 30731 AAGGCTCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATCT 30672 Query 192539 T 192539 | Sbjct 30671 T 30671 >seq8363 Length=52898 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| ||| || || ||||| || | || | |||||| ||||| || || Sbjct 26328 ACCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCT 26387 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| ||| |||| || ||||||||||| |||||||| |||| |||||||| || || Sbjct 26388 CAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGG 26447 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||||||||| |||||| || ||||| || | || || | || || Sbjct 26448 AATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGAC 26507 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||| || ||||| || || ||||| | || |||||||| Sbjct 26508 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984105664708950