Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9081 275 1e-68 seq3668 141 2e-28 seq8363 138 2e-27 >seq9081 Length=2203 Score = 275 bits (304), Expect = 1e-68 Identities = 549/818 (67%), Gaps = 9/818 (1%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| ||||| ||| ||| ||| || ||||| || || || || | ||| ||||| Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951 | |||||| |||||||||||||||||||| || || | |||| | |||| Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 || |||||| || ||||||| |||| ||||||| ||||||||||| ||||| | Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227 Query 39012 TTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattat 39070 || | ||| | ||| ||| |||| |||||| ||||| || | |||||| | | | || || Sbjct 228 TTTACTGGAAGTGCGTCAGTCAA-AAATTCCTTTTCAATCTTTACAGCCTCTGTGATAAT 286 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 || | | ||||| | || | ||| ||| || || | ||| ||||| Sbjct 287 TTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTG---TACATTAAGCATGC 343 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 ||| || ||| | |||||||| || || |||| |||||| || || || ||||| Sbjct 344 AAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGG 403 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 ||||||||| | ||| |||| |||||| |||| |||||| || | | |||||| || || Sbjct 404 CATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCC 463 Query 39251 CTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCA 39310 ||| ||| ||||| || || | || | | ||||| || | | | | ||||| Sbjct 464 CTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCA 523 Query 39311 ATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 ||||| |||||| ||||| ||||| || | | |||| | | || ||||| || ||||| Sbjct 524 ATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAA 583 Query 39371 TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGA 39430 | || ||||| || || Sbjct 584 GAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAATCGAGTACATCTCTGA 643 Query 39431 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT-GAA 39489 |||||| ||||||||| ||||| ||| |||||| | ||||||| |||| ||| Sbjct 644 GTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGT-TACTTGAA 702 Query 39490 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 39549 |||| | ||||||||||| ||| |||||| |||||| || || ||||| || |||| Sbjct 703 CTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGA 762 Query 39550 ATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA-AGATTCA 39608 ||||||| || | | ||||| || ||| ||| ||||| |||||||| | || Sbjct 763 ATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTC- 821 Query 39609 AGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 39646 | ||| ||||||||||| |||||||| | |||||| || Sbjct 822 ATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859 >seq3668 Length=32275 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||| | ||| || | || ||||| || || | || || ||||| || Sbjct 30906 ATAATACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAG 30847 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | ||| | || ||||||||||||||||| || ||||| | ||||| || Sbjct 30846 TCACTCAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCT 30787 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| ||||||||||| ||||| || || || ||||| ||||| || || | Sbjct 30786 GGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGC 30727 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | ||| ||||||||||||||||||||||| | ||| || ||||| || Sbjct 30726 TCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATCTT 30671 >seq8363 Length=52898 Score = 138 bits (152), Expect = 2e-27 Identities = 179/246 (73%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| | |||||||| ||| || || ||||| || | || | |||||| Sbjct 26310 CTTCTTACGTTTCTTGGCACCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTT 26369 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 |||||| || || || | ||| | || || ||||||||||| ||||| || || Sbjct 26370 CTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAA 26429 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 || ||||| || || || ||||||||||||||||| |||||| || ||||| || Sbjct 26430 TCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAAT 26489 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 || || || | || ||||| || ||||| || ||||| || || ||||| | ||| || Sbjct 26490 CGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGAT 26549 Query 172064 CTGCAT 172069 |||||| Sbjct 26550 CTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904800228486600