Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5596 168 2e-36 seq6636 125 2e-23 seq17730 107 6e-18 seq9081 107 6e-18 >seq5596 Length=16775 Score = 168 bits (186), Expect = 2e-36 Identities = 657/1024 (64%), Gaps = 18/1024 (2%) Strand=Plus/Plus Query 155323 CAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATG 155382 || |||||||||||||||| || | || ||| | | |||||| || ||||| ||| Sbjct 11899 CATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATG 11958 Query 155383 CGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGAT 155442 || |||| | ||| | || ||||| || |||| |||||| |||| ||| |||| Sbjct 11959 GCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGAT 12018 Query 155443 GCCTGTA-ATTGCTCCTGCTTGTCTTCTT-GTTTGGGTAAAAATTCACATCAATAATGTT 155500 | || | ||| || | || |||||| ||| || ||||| || |||||||| || Sbjct 12019 GTCTAAAGTTTGATC--GTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTT 12076 Query 155501 ATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTT 155560 |||||||||| | | || ||| || || || ||||| | ||| || ||| Sbjct 12077 ATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATTCTTT 12136 Query 155561 ---ATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTC 155617 || || ||||||||| | |||| || || | |||||| || ||| || Sbjct 12137 ACGATTTGGCTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTC 12196 Query 155618 CT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTA 155676 | | | | | |||| ||||| ||| || | || || | ||| || || | Sbjct 12197 ATCTTTACTTG-AATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAA 12255 Query 155677 AATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTG 155736 ||||| || || ||||||| ||||| |||||||| || || || || || ||||||| Sbjct 12256 GATTCTGTTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTG 12315 Query 155737 TCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGT 155796 |||| | || | || | ||| | ||| | || | || || | ||| | Sbjct 12316 TCTCAACTTGAGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAA 12375 Query 155797 ATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCAC 155856 ||| ||||| | |||||| ||||| || || | || | ||| ||| ||| Sbjct 12376 ATCGTCCTTCTGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCAT 12435 Query 155857 TCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT---ACAC 155913 || || || || ||| || || | | ||||| |||| ||| | || |||| Sbjct 12436 AAAGACCTGGACAGCTATGAGGACACATTAAAGACCACATTTCATT---GTTTTCAACAC 12492 Query 155914 GCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT 155973 | | |||||| | ||| ||| | |||||| || | || || || || | Sbjct 12493 GTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTT 12552 Query 155974 CATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCA 156033 | | || ||| ||| || |||| || || || ||| ||| || |||| Sbjct 12553 CTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCA 12612 Query 156034 GATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTCT 156090 ||| | ||||| |||| | | || ||||| ||||| ||||| || || || | Sbjct 12613 AATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTAT 12672 Query 156091 TATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 ||||| | || | | |||||| | | |||||| ||| | ||||| || || |||| Sbjct 12673 TATTGTAAACTCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATAT 12732 Query 156151 GCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAA 156210 | || ||| |||| | ||||| || | ||||| ||||||| |||| || Sbjct 12733 ATGTCCCTTTTGAACGAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAA 12792 Query 156211 TTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATA 156270 || | ||||||| ||||| ||| | |||| || || || || ||||| |||||| | Sbjct 12793 TTAGCGCGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGA 12852 Query 156271 GTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTG 156330 | ||| |||| ||| |||||||| |||||||| | || ||| ||||| |||| || Sbjct 12853 GAAGAAAGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCGAAAAGTGTTGGTGATG 12912 Query 156331 CATG 156334 |||| Sbjct 12913 CATG 12916 >seq6636 Length=7098 Score = 125 bits (138), Expect = 2e-23 Identities = 215/309 (70%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || ||||||| || ||||| |||||| ||||| |||||||| Sbjct 6433 ATTTCTTACAGTTCCATCATAATGAACCATAACAGACTCCATAGCTTTGATCAAACGACG 6374 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| || |||||||||||| |||||||| ||||| ||||||| || Sbjct 6373 CTGGATATATCCAGTTTCAGCTGTTTTTACAGCAGTATCAATAAGACCTTCACGACCTCC 6314 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| ||||| | | ||| || || || ||| | || |||| ||||| Sbjct 6313 CATAGCGTGGAAATAAAATTCTGAAGGAGTAAGTCCAGCAAGGTATGAATTCTCGACGAA 6254 Query 302718 ACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 |||||| | || || || ||||||| || | || || |||| ||| | || Sbjct 6253 ACCACGAGATTCAGGACCGTAATCGTC---TTTAATGAAATGAGGCAAGGTTCGTTTACG 6197 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | || | || || || || || ||||| || || ||||| | || | ||| | ||| Sbjct 6196 AAAACCAAAAGGAATTCGTTTACCTTCAACATTTTGTTGTCCGACACAAGCAATAACCTG 6137 Query 302835 CGAAATATT 302843 || ||||| Sbjct 6136 TGAGATATT 6128 >seq17730 Length=12112 Score = 107 bits (118), Expect = 6e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| | ||||||||||| ||||| |||||||| | | || |||| | | ||| || Sbjct 4566 TTTTCTGCCAACAGCATCGATTTCATCAATGAATAAAATGCATGGAGCTTGCTTTCTAGC 4625 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 |||||||| | || | ||||| |||| |||| ||||||| ||||||| | ||||| Sbjct 4626 CATTGCAAACATGTCACGAACACGAGATGGACCAACACCAACAAACATTTCCAAGAATTC 4685 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | || || ||| || | ||||||||||| || || ||| | |||| ||| Sbjct 4686 GGAACCAGAAACAGTAATAAAAGGAACATTTGCTTCTCCAGCCGTTGCTTTAGCCAAAAG 4745 Query 289203 TGTCTTACCTGT 289214 || |||||||| Sbjct 4746 AGTTTTACCTGT 4757 >seq9081 Length=2203 Score = 107 bits (118), Expect = 6e-18 Identities = 280/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 ||||| || |||||||| || || ||||| ||| || ||| ||| || | Sbjct 769 TTAGCATTCTTTGCTGCATCAGACGGCATTGTAAATGAGAACTTAATTGAACGATTCAGT 710 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 ||||||||| | | ||||| || ||||||||| | || ||||| ||||||||| Sbjct 709 CAGGAAGTTCAAGTAACAGAAGCTCGATTCTTTTATGGATTCCAAATTGCTATGGAAAAT 650 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 | || || | || || | ||||||||| ||||| ||| ||| | ||| Sbjct 649 GTACACTCAGAGATGTACTCGATTCTAATTGAAACTTATATCCGTGATGCAAAGCAGCGT 590 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTT-CCTTGTATTAAAAAGAAATCTGACTGGGC 133467 || ||||||| || ||| | || ||| || || | || || || | |||||||| Sbjct 589 GACTTCTTATTCAATGCTATT-GAGACTTTACCGTGCGTAAAGAAAAAGGCAGACTGGGC 531 Query 133468 TATTAAATGGAT--CCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525 | || ||||| |||| | ||| ||| | |||| | || | |||| |||||| Sbjct 530 CTTAAATTGGATATCCAGTA--AGCATGCAAACTTTGGTGAACGAGTTATTGCCTTTGCT 473 Query 133526 GTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCG 133584 | || ||||| ||||| || ||||| || ||| | || |||||| |||| ||||| Sbjct 472 GCTGTCGAGGGGATTTTCTTTAGTGGAAGCTT-TGCAGCAATCTTTTGGATTAAGAAGCG 414 Query 133585 TGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644 ||| | | || || || || || || ||||||||||| || ||||| | |||||| Sbjct 413 TGGATTAATGCCAGGTTTGACATTCTCAAATGAACTTATTTCGAGAGACGAAGGACTTCA 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471257961135149