Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq7918 136 4e-27 >seq7918 Length=32631 Score = 136 bits (150), Expect = 4e-27 Identities = 273/405 (67%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 41648 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41707 ||| | ||||| || |||||||| ||||| ||||| || || ||||| ||| | ||| Sbjct 18445 TCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGCTCTTGT 18386 Query 41708 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTG 41767 || | || || | | ||| | | || | ||||| || ||| || ||| Sbjct 18385 GTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCGCCAGTGCCATTGTG 18326 Query 41768 AAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGT 41827 || || | || |||||||| ||||| || | || ||||| | || ||||| | || Sbjct 18325 AAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCCTTAGGC 18266 Query 41828 TCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATT 41887 || || || ||||| || ||||||| ||| || || || | |||||| | Sbjct 18265 AGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTACAAACATTTC 18206 Query 41888 CAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTAT 41947 || ||||| || ||||| || || ||||| ||||| || || || || || || | | Sbjct 18205 CAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTACCCTCTTC 18146 Query 41948 TATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTT 42007 |||||| | |||||| ||||| ||| |||| | || | |||||||| || ||| Sbjct 18145 TATCCGCTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAATCGGGGCGTT 18086 Query 42008 GAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAAC 42052 || | || || | || || ||||||||||| |||||||| ||| Sbjct 18085 GAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACAGCTGAAC 18041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563589251936040