Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq19054 120 5e-22 >seq19054 Length=2482 Score = 120 bits (132), Expect = 5e-22 Identities = 183/256 (71%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 237475 TATTACTGTCATGTCGCAGTGTGAACATCACTTCGTGACAATTGATGGTAAAGCAACAGT 237534 ||||||| | || || |||||||||||| | ||||| || |||||| || | ||| Sbjct 558 TATTACTCTAATCACGACCTGTGAACATCACCTGGTGACCATCGATGGTTTGGCTAAAGT 617 Query 237535 TGCTTACATCCCTAACAAGAAAGTTCTTGGCTTGTCTAAGATGAATCGCATTGTTGAGTA 237594 ||||| ||||| ||| || | | ||||||| |||||||| ||||||||||| | | Sbjct 618 GGCTTATATCCCAAACCAGCAGATCATTGGCTTATCTAAGATCAATCGCATTGTACAATT 677 Query 237595 TTTCAGTCGTCGCCCTCAAGTGCAAGAGCGTTTAACGATTCAAA--TCGCTGAAGCTCTA 237652 |||| |||||| || || || || ||||||||||| |||| | ||| ||| || Sbjct 678 TTTCGCTCGTCGTCCCCAGGTACAGGAGCGTTTAACCCAACAAATTTTGCT--AGCATTA 735 Query 237653 AAGCTTATCTTAGAAACTGACAACGTAGCAGTAGTTCTAGA--CTGTGAACACTATTGTG 237710 | | | ||||| ||||||| ||||||| | || ||||| ||||| |||| Sbjct 736 CAAACACTACTCGAAAC-NACAACGTCGCAGTAGCCATTGATGCTGTG--CACTACTGTG 792 Query 237711 TTAAGTCTCGTGGCGT 237726 |||| | |||||||| Sbjct 793 TTAAAGCACGTGGCGT 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791613432125320