Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq29583 89.7 6e-13 seq19326 86.0 7e-12 >seq29583 Length=6804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 6704 TGGGGGCATAGCTCAGTTGGTAGAGCGCCTGTTTTGCAAGCAGAAGGTCAGCGGTTCGAC 6763 Query 9832 TCCGCTATTCTCCA 9845 |||||| ||||| Sbjct 6764 TCCGCTTGCCTCCA 6777 >seq19326 Length=6529 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 3620 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 3561 Query 9832 TCCGCTATTCTCCA 9845 ||| ||||||||| Sbjct 3560 TCCCTTATTCTCCA 3547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549418510700440