Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5596 165 7e-36 seq8363 143 2e-29 seq3668 131 2e-25 >seq5596 Length=16775 Score = 165 bits (182), Expect = 7e-36 Identities = 936/1481 (63%), Gaps = 46/1481 (3%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 |||||| |||||||| | || |||| || || | ||| ||||| | ||||||||||| Sbjct 11249 TTTATCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCC 11308 Query 138213 CGTTTTTA-ACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 ||||| | |||| || ||| | || | || || || || | | | | ||| | | Sbjct 11309 AGTTTTAAGTCCCAACTT-CCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTG 11367 Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331 ||| ||| | | || || || |||||||| |||||||| ||||| || |||||| | Sbjct 11368 GTTCCGCTACATGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTG 11427 Query 138332 CCATGTTAA-TTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATA 138390 |||| | || || | || || | || ||||| || || || || | | |||| Sbjct 11428 CCATTTGAATTTGTGTCTTGACAGAT-ATTTCCCATACTGTTTTATAAATGTTTTTAATA 11486 Query 138391 TGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTC 138450 | || ||| ||||| ||| || || || |||| || |||| || Sbjct 11487 TCATCAGGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTC 11546 Query 138451 ATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTATCAGATATCTGTTTATGAC 138509 |||||||| | | | | || || |||| || || || |||| || | || Sbjct 11547 ATGTCATCATCCCATA-AACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAAC 11605 Query 138510 CTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGA 138569 ||||| || || | || |||||| |||| || | ||| | || ||||| Sbjct 11606 TTGAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACT 11665 Query 138570 TTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGA 138629 || || || || | ||||||||| || | || || ||||| || | || | || Sbjct 11666 CTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGA 11725 Query 138630 ATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCT 138689 ||| || | ||| | ||||||| ||| || | | ||| |||||||| || | Sbjct 11726 ATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGT 11785 Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749 ||| | || | ||||||||| || ||||| || || | | |||| ||||| || Sbjct 11786 TGGTGTCTTTTCCCACATATCATATTGTAATATACCTTTTGATACTGGACATCCTTCATA 11845 Query 138750 CGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTA 138809 || || || |||| | || ||||| || ||||| ||| | || ||||| || Sbjct 11846 CGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATA 11905 Query 138810 AATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCG 138869 ||| || || || || ||||| | ||| || || | |||||| ||||| | Sbjct 11906 AATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATGGCATTCT 11965 Query 138870 GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAG 138929 | || | || || || || | ||||| | || | ||||| || ||||| | | Sbjct 11966 CATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAA 12025 Query 138930 ATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATT 138989 ||||| ||| || |||| | ||||| | || || || || ||||| |||||||| Sbjct 12026 GTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATT 12085 Query 138990 TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTC 139049 || ||| | ||| || | ||| ||| | ||||| ||| | || | | Sbjct 12086 TCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATAT-TCTTTACGATTTG 12144 Query 139050 GTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTC 139109 | | |||||| | || | ||| || |||| || || || || ||||| Sbjct 12145 G--------CTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTC 12196 Query 139110 GTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCT 139167 || | || |||| ||||||||| | ||| ||||| || ||| || || Sbjct 12197 ATC--TTTACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCA 12254 Query 139168 AAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCA 139227 | ||| |||||||| ||| || ||||| ||||| || || |||||||| ||||| || Sbjct 12255 AGATTCTGTTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCT 12314 Query 139228 GTTTCCACTTGTGTCTCTATAATGAATTTGAAC---AAGTCCCTAGCTTGTATTTGACGC 139284 || || ||||| | || ||||| | ||| || || || | || |||||| Sbjct 12315 GTCTCAACTTGAGATTCAATAAT---TGCAAACCATAAATCTTGTGCCTTTACTTGACGA 12371 Query 139285 ACGTAAAGTTCGTCGCGCTCGTACTTTTCG----TAGAGTTCGTCGAATCGTTCACCGTA 139340 | |||| ||||| || | | | ||| || || | || ||| || ||| || Sbjct 12372 A--TAAA--TCGTCCTTCTGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATA 12427 Query 139341 GGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTT 139400 | ||| ||||| | |||| | | ||||||||| | ||||| | | || | Sbjct 12428 AGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTC 12487 Query 139401 GACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC----GCGCG-CC 139455 || || ||| |||| || |||||||| ||||| | | || ||| || || | Sbjct 12488 AACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAAC 12547 Query 139456 TTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGC 139515 ||||| | |||| || || | || || | || || |||||||| || | ||| Sbjct 12548 TTCTTCTTTTCC---AGTATTTTTCTTTAAATCT--AGAAACTCAAAAACATCTCCATGC 12602 Query 139516 CATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT---TTGCCACCTTGATCGACGTGT 139572 || ||||||| ||||| || | ||| || ||| || ||||||||||| || | Sbjct 12603 CAAGGTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAA 12662 Query 139573 CGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACC 139613 ||| | | ||||||| | || | |||||| || | ||||| Sbjct 12663 CGTGCTGTATTATTGTAAACTCTCAACATAGGTACGAGACC 12703 >seq8363 Length=52898 Score = 143 bits (158), Expect = 2e-29 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| | || ||||| || ||||| |||||||| || ||| Sbjct 26558 ACCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GCC 26500 Query 24761 ACCG-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | || |||| | |||| || || || || ||||| ||||||||||| ||||| || Sbjct 26499 ATCGGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGA 26440 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATT 24878 ||||||||| |||||||||||||| ||||| | ||||| | || ||| || || | Sbjct 26439 TCAACAACGATTGATCTTTGCCGGTAAACAATTAGAGGA-TGGACGCACATTGAGCGACT 26381 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 | || ||||| || || || ||||| ||||| |||||||| Sbjct 26380 ACAATATTCAGAAAGAGTCAACACTTCACTTAGTGTTGCG 26341 >seq3668 Length=32275 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | ||||| |||| |||||||| || || | ||||| || | | Sbjct 30673 GATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTC 30732 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||||||||||||||||||||| || || ||||| Sbjct 30733 TGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 30792 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 ||||||||| ||||| || || ||||| |||| || | || ||| || || || | Sbjct 30793 ACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGA-TGGACGTACATTGAGTGACTACA 30851 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 | || ||||||||||| ||| | || ||||| Sbjct 30852 ATATCCAAAAGGAATCAACATTGCATTTGGT 30882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449730704861560