Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5577 208 6e-49 seq3668 89.7 4e-13 >seq5577 Length=36082 Score = 208 bits (230), Expect = 6e-49 Identities = 316/450 (70%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 34194 ATATTGTGCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGT 34253 || ||||| || || ||||||| || || || || | |||||| | | || | Sbjct 6594 ATTTTGTGTTGGTGGATTTTTCAAAATAAAAGTATTTACTTTATGCTGAACTTTTATCAA 6653 Query 34254 GCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGAT 34313 || ||||||||||| || || || | || | || || | |||||||||| || | Sbjct 6654 TCCATGATAACCGCAAGCCTTACAACTTTGCGAAATTATTTCCTTTTTAGCGACAACAGT 6713 Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 | || || || || ||||||||||| |||||||| ||| |||| || ||||||||||| Sbjct 6714 TAAGTCCGTTTCAGGATTGTCACATTCTGGACACAAGACATACTTTCGAATGAAACCATC 6773 Query 34374 AAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTT 34433 ||||| ||| || || ||| | || || || || |||||||| || || || ||||| Sbjct 6774 AAGCAAGTCTTGCAATTTAGTTGCATCATGCGATCCATTGACGATAAAACGCTCATTTTT 6833 Query 34434 GTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGC 34493 | ||| | ||| ||||| || || || || || || || || ||||| || || | || Sbjct 6834 ATGATCAAACTGAGTTTGAGCTCCAAGTTCACATCCAAAATATTTTGTTGGATATGTTGC 6893 Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 || || | ||||| || | ||| | |||||| ||||||||||| || || || || Sbjct 6894 TGGGCGATTTAATGCCTTTGCAACTTCTGCCATGTTAACGATGACAGTTTTAATTCCATT 6953 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 || || || || || ||||| | || || |||||||| ||||| || | ||| | Sbjct 6954 TCCTTTACCCTCAACTTTGGCCAAAATTCGGGGCATTTTATAGCGATAATAAAGGTCAGT 7013 Query 34614 CACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||||| || || || || | ||||||||| Sbjct 7014 AACATTACGATTGACATTTAAAGTCCCCAT 7043 >seq3668 Length=32275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || |||||||| ||||| || |||||||| || | ||| |||||| Sbjct 30671 AAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCT 30730 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| ||| | || || ||||| ||||||||||| | || ||| Sbjct 30731 TCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGAT 30790 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | || |||||||| |||| |||| | ||| || || ||| Sbjct 30791 CAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTAC 30850 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || ||||| ||||| || ||||| |||| Sbjct 30851 AATATCCAAAAGGAATCAACATTGCATTTGGT 30882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412692279966761