Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq8363 116 6e-21 seq3668 114 2e-20 >seq8363 Length=52898 Score = 116 bits (128), Expect = 6e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || || || |||||||| | || || || | | Sbjct 26554 TGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCGG 26495 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| ||| ||||||||| ||||| || ||||||| Sbjct 26494 ACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAAC 26435 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| |||||||||||||| ||| | || || | || || |||| Sbjct 26434 AACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACAATA 26375 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || ||||| || || | || ||||| || || | |||| ||| Sbjct 26374 TTCAGAAAGAGTCAACACTTCACTTAGTGTTGCGCCTTCGAGGTGGT 26328 >seq3668 Length=32275 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||||||||| || ||||| || ||| | || || || | | | Sbjct 30675 TGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTCTG 30734 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || || || ||| |||||||| |||||||| ||||||| Sbjct 30735 ACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAAC 30794 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || || | || || |||| Sbjct 30795 AACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTACAATA 30854 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| || | ||||| || Sbjct 30855 TCCAAAAGGAATCAACATTGCATTTGGT 30882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785874761746840