Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq7918 277 3e-69 >seq7918 Length=32631 Score = 277 bits (306), Expect = 3e-69 Identities = 692/1041 (66%), Gaps = 34/1041 (3%) Strand=Plus/Minus Query 71330 CGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGA 71389 |||| || || | ||||||||||| ||||| || || || || | | ||||| | Sbjct 16037 CGGTGAATGTAGCCCGTTATGATCAACAGAAATATCCGATTTTTGAGCGGTTAATTGAAA 15978 Query 71390 AACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACT 71449 |||| || || || || ||||| || |||||||| ||||| |||| || || ||||||| Sbjct 15977 AACAGCTCTCTTTTTTTTGGCGCCCAGAAGAGGTTGATGTCTCGCGTGATCGCATCGACT 15918 Query 71450 TCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTTTCTAACCTGAAATACCAAACCC 71509 |||| | | || ||||||| | || || || || || || ||||||||||||| Sbjct 15917 ACCAGCAGCTACCTCCTCATGAACAGCATATTTTTATTAGCAATCTAAAATACCAAACCC 15858 Query 71510 TGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCCTTGCTGCCGATCTGTTCTATC- 71568 ||||||| |||||||| || || ||||| || || || || | || ||| ||| | Sbjct 15857 TGCTGGATTCGATTCAAGGGCGCAGCCCTAATGTCGCTTTTTTACCC--CTGGTCTCACT 15800 Query 71569 -CCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTC 71627 || || || ||||||||||| ||||| ||||| || || ||||| |||||||| || || Sbjct 15799 GCCAGAGCTTGAAACCTGGATCGAAACTTGGGCCTTTTCAGAAACCATTCACTCCCGTTC 15740 Query 71628 ATACACCCACATCATCCGTAATATCTTTACTGACCCCTCCATCGTGTTTGATGACATCGT 71687 || || |||||||| || ||||| | | ||| || || | ||| | || ||| | Sbjct 15739 CTATACTCACATCATTCGCAATATTGTCAATGATCCTGATGTCATCTTTAAGGATATCAT 15680 Query 71688 GACCAACGAACACATC---AAAGCGCGTGCTGAGTCCGTCACGGAGTATTACGACCAGCT 71744 | ||| | | ||| ||| ||||| | | || | || || || |||| Sbjct 15679 GCTCAATCAGGAGATCCTGAAA---CGTGCCAACGATATTGCGCATTACTATGATGAGCT 15623 Query 71745 GATCGAAATGACCATGTACCTCAACTTACTG---GGTGAAGGTACTCATGTAATCAATGG 71801 |||||| | || | ||| | || ||| || ||||| || ||| || Sbjct 15622 GATCGA---GGCCCTATACAGCTACCAGCTGTTAGGATTTGGTACGCACCAAAT---AGG 15569 Query 71802 TAAGAAAGTCGTG---GTCTCGATGCGTGCTATCAAGCGTCTGGTCTACCTGTGCATCGT 71858 || ||| | || || | || | | || | |||| || || | | Sbjct 15568 TACTAAAACCTTGAACATCAGCCTACGGGAGTTGAAAAAAAAGCTCTATCTCTGTTTAAT 15509 Query 71859 GTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTT 71918 | ||||| || ||||| |||||||||||||||||| ||||||||||| |||||||| Sbjct 15508 GAGTGTCAATGTCTTGGAGGCCATCCGCTTCTATGTCAGTTTTGCCTGCTCCTTTGCCTT 15449 Query 71919 TGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACTGATCGCCCGTGATGA 71978 |||||||||| | | ||||| ||||| |||||| | || ||| |||| ||||| ||||| Sbjct 15448 TGCTGAACGCAAATTAATGGAGGGCAATGCCAAGTTGATCAAATTGATTGCCCGGGATGA 15389 Query 71979 AGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAATGAAGTCCGGTGCTGACGA 72038 ||| || || | || |||||||| | ||| | ||| | || || || Sbjct 15388 AGCGCTACACTTAGTGGGTACCCAGCATCTACTCAGTATCATGGCTGCGGGACAAGATGA 15329 Query 72039 TGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACATACGCACTCTTTAAGGA 72098 | || |||||||| | | |||||| || ||| | | || |||| | Sbjct 15328 TAGCGAAATGGCGGAGGTAGCACGGGAGTGTCGGGCGGAAGCTGAAGCCATCTTCATCAC 15269 Query 72099 CGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAGGACGGGTCGATGATCGG 72158 || || ||||| ||||| ||||| ||||||||| | || || |||||||| Sbjct 15268 GGCGGCGACACAGGAAAAAGAGTGGGCAGCCTATCTATTTAAATCGGGCTCCATGATCGG 15209 Query 72159 TCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAACATC--CGTATTCGC 72216 ||| ||| ||||| | || || || | || ||||| || ||||| ||||| | Sbjct 15208 TCTCAACCGCGAGATTTTATGTCAATATGTGGACTACATTAC--ACATCTGCGTATGCAG 15151 Query 72217 GCCATCGG--TTACGATGACATCTACGCCGGTGTCAAAGCT--AACCCAATCCCATGGAT 72272 || |||| | || | ||| | | | ||| ||| ||||| | || ||||| Sbjct 15150 GCAGTCGGCCTGACACCCCCTTCTTCTC----GGCAACGCTCCAACCCGCTGCCTTGGAT 15095 Query 72273 CAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAAGTGGAAGTAAGTTC 72332 |||| |||| | ||| || ||||| || || || || || || |||||||| || || Sbjct 15094 CAACAGCTGGCTCAGTTCCGATAACGTTCAGGTGGCACCTCAAGAGGTGGAAGTGAGCTC 15035 Query 72333 TTATCTGGTCGGTCAGATAGA 72353 |||||||||||| ||||| || Sbjct 15034 TTATCTGGTCGGGCAGATCGA 15014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867019049088480