Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq3947 93.3 5e-14 >seq3947 Length=2916 Score = 93.3 bits (102), Expect = 5e-14 Identities = 345/527 (65%), Gaps = 33/527 (6%) Strand=Plus/Plus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAA------CAATTAAATGATATA 168581 || ||||||||| | ||||||||||| || ||| | ||| ||| || ||||| Sbjct 996 GAGCTTTTATGGTTCATAAAAGGTTCCACAGATGCTAAATTGCTTCAAGCGAAGAATATA 1055 Query 168582 GGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACC 168641 | | ||||| ||| || || | |||||||| | ||| || ||||||| Sbjct 1056 CG------AATTTGGGACGGAAACAGTACGCGTGAATTCCTCGATGCATCCGGTTTTAAT 1109 Query 168642 GAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCT 168701 || | ||| |||||||| |||||| ||||||||||||||||| | ||| || || Sbjct 1110 GAGCGTCAAGTGGGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCC 1169 Query 168702 CAATATATTGAC-TGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAAC 168760 ||||||| ||| || ||| || || | ||||||| | || ||||||| | Sbjct 1170 CAATATA-AGACATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGT 1228 Query 168761 TA-TAAATACTTTACACAACAATCCGGAAAATAGAAGAA-TATTAATTAA-TAGTTGGGA 168817 || | || | ||| | ||||| | || || ||| |||| |||| | ||| | Sbjct 1229 TATTGAACGCATTA-AATCTAATCCAAATGATCGACGAATTATT--TTAAGTGCCTGGAA 1285 Query 168818 TGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGT 168877 | | | || |||||| ||||| || ||||| | | || || |||||||| Sbjct 1286 TCCAGTGGATATTCCACAAATGGCACTTCCACCATGTCATTGTCTGGTACAGTTTTATGT 1345 Query 168878 AAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGG 168937 | ||| | | | || ||| || || || ||||||||||||||| | || | || Sbjct 1346 --CGCAAATGGCGAGTTGAG-TTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGG 1402 Query 168938 AGTACCTTATAATATTGGATTTTATTCATTTTTAAC--ACTTG--TGCT-AAGTAAATGG 168992 ||| |||| |||||| | || || | | || || || || |||| | || | Sbjct 1403 AGTTCCTTTTAATATCGCATCATACGCTCTATTGACGTACATGATTGCTCATGTTA---- 1458 Query 168993 TGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCA 169039 ||||| | |||||| | ||| ||||||||||||| |||| ||| Sbjct 1459 -CAAATTTAAAGCCTGGCGATTTTGTTCATACTTTTGGTGATGCTCA 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634941972929560