Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_023611.1
Length=198533
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 93.3 5e-14
>seq3947
Length=2916
Score = 93.3 bits (102), Expect = 5e-14
Identities = 345/527 (65%), Gaps = 33/527 (6%)
Strand=Plus/Plus
Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAA------CAATTAAATGATATA 168581
|| ||||||||| | ||||||||||| || ||| | ||| ||| || |||||
Sbjct 996 GAGCTTTTATGGTTCATAAAAGGTTCCACAGATGCTAAATTGCTTCAAGCGAAGAATATA 1055
Query 168582 GGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACC 168641
| | ||||| ||| || || | |||||||| | ||| || |||||||
Sbjct 1056 CG------AATTTGGGACGGAAACAGTACGCGTGAATTCCTCGATGCATCCGGTTTTAAT 1109
Query 168642 GAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCT 168701
|| | ||| |||||||| |||||| ||||||||||||||||| | ||| || ||
Sbjct 1110 GAGCGTCAAGTGGGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCC 1169
Query 168702 CAATATATTGAC-TGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAAC 168760
||||||| ||| || ||| || || | ||||||| | || ||||||| |
Sbjct 1170 CAATATA-AGACATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGT 1228
Query 168761 TA-TAAATACTTTACACAACAATCCGGAAAATAGAAGAA-TATTAATTAA-TAGTTGGGA 168817
|| | || | ||| | ||||| | || || ||| |||| |||| | ||| |
Sbjct 1229 TATTGAACGCATTA-AATCTAATCCAAATGATCGACGAATTATT--TTAAGTGCCTGGAA 1285
Query 168818 TGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGT 168877
| | | || |||||| ||||| || ||||| | | || || ||||||||
Sbjct 1286 TCCAGTGGATATTCCACAAATGGCACTTCCACCATGTCATTGTCTGGTACAGTTTTATGT 1345
Query 168878 AAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGG 168937
| ||| | | | || ||| || || || ||||||||||||||| | || | ||
Sbjct 1346 --CGCAAATGGCGAGTTGAG-TTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGG 1402
Query 168938 AGTACCTTATAATATTGGATTTTATTCATTTTTAAC--ACTTG--TGCT-AAGTAAATGG 168992
||| |||| |||||| | || || | | || || || || |||| | || |
Sbjct 1403 AGTTCCTTTTAATATCGCATCATACGCTCTATTGACGTACATGATTGCTCATGTTA---- 1458
Query 168993 TGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCA 169039
||||| | |||||| | ||| ||||||||||||| |||| |||
Sbjct 1459 -CAAATTTAAAGCCTGGCGATTTTGTTCATACTTTTGGTGATGCTCA 1504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634941972929560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |