Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3947 129 8e-25 >seq3947 Length=2916 Score = 129 bits (142), Expect = 8e-25 Identities = 281/412 (68%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 180554 GGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGAC 180613 |||||||| || ||| ||||||||||||||||| | ||| || || ||||||| ||| Sbjct 1122 GGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATAA-GAC 1180 Query 180614 -TGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTAT 180672 || ||| | ||| | ||||| || || ||||||| | ||||| ||| || Sbjct 1181 ATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGAACGCAT 1240 Query 180673 AAAAAATAATCCCGAATGC-CGAAGAATAATCATAGATAGTTGGAATGTATCACAATTAC 180731 ||| |||||| |||| ||| |||| || || | |||||| | | | | Sbjct 1241 TAAATCTAATCCA-AATGATCGACGAATTATTTTAAGTGCCTGGAATCCAGTGGATATTC 1299 Query 180732 CAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAATAAAATTT 180791 || | ||||| |||||||||||||| ||| ||||||| |||||||| |||| Sbjct 1300 CACAAATGGCACTTCCACCATGTCATTGTCTGGTACAGTTTTATGTCGCAAAT---GGCG 1356 Query 180792 ATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATA 180851 | || ||||||||| || |||||||| || ||| | || | || || || | ||||| Sbjct 1357 AGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCCTTTTAATA 1416 Query 180852 TTGCTTTCTATTCATTTTTG--GTATGTGTTCTCTCAAAGTGGTGC-AATTTAACCCCTG 180908 | || | || | | ||| ||| || | |||| || | | ||||||| |||| Sbjct 1417 TCGCATCATACGCTCTATTGACGTACATGATTGCTCA---TGTTACAAATTTAAAGCCTG 1473 Query 180909 GAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTAACCATATTGA 180960 | | ||| |||| |||||||| |||| |||| | || | || || ||||| Sbjct 1474 GCGATTTTGTTCATACTTTTGGTGATGCTCATATTTACACGAATCACATTGA 1525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655036915693000