Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq12008 82.4 1e-10 >seq12008 Length=33819 Score = 82.4 bits (90), Expect = 1e-10 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 115141 TATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGGAGCA 115200 |||||||||||||| | | || || ||| ||||||| |||||| || || ||| Sbjct 14864 TATGGACGAATTGCACCTCGTTCAGGATTAGCAGTTAAAAACTTTATTGACGTTGGTGCA 14805 Query 115201 GGTGTTGTCGATGAAGATTATCGAGATAATTT---AATGGTTATTTTACATAACCATTCA 115257 || |||||||||||||||||| ||| || || | || || || ||| || ||| Sbjct 14804 GGAGTTGTCGATGAAGATTATAGAGGAAACTTGGGTGTAGTCATGTT---TAATCACTCA 14748 Query 115258 GATGTTGATTTTAAAATTGAAATTAAAGATAGGATTGCGCAATTAAT 115304 ||||| ||||||| |||| | ||| | ||||| |||||||| Sbjct 14747 GATGTCGATTTTACTATTGCCAAAGGCGATCGTATTGCTCAATTAAT 14701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628298038494720