Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3668 125 7e-24 >seq3668 Length=32275 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| ||||| | ||| ||||| ||||| || ||||| || ||| Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || | ||||| | |||||||||||| |||| | |||||| ||||| || || Sbjct 30840 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 30782 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| || ||| || | | ||| | ||||| | || || || Sbjct 30781 AATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAAC 30722 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || || || || |||||||| ||||| |||||||| Sbjct 30721 TTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488362768496400