Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq10365 161 3e-34 >seq10365 Length=11165 Score = 161 bits (178), Expect = 3e-34 Identities = 520/800 (65%), Gaps = 14/800 (2%) Strand=Plus/Plus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||| ||||| ||| |||||||| || | ||| | || ||||| || | ||| Sbjct 839 TTGGTCCTACCGGTAGTGGTAAAACCTTGCTGGCTGAGACGTTGGCACGACTGCTCGATG 898 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 | || | | || | ||||| || | | || ||||| || ||||| || ||||||| Sbjct 899 TGCCCTTTACCATGGCGGATGCGACCACCCTCACGGAAGCGGGCTATGTCGGCGAAGATG 958 Query 188897 TGGAAAACGTATTGCTTCGT---TTAATCCAAGCAGCTGATTACGATATCGAATTAGCGG 188953 ||||||| |||| ||| || | ||| || || ||| | | |||| Sbjct 959 TGGAAAA--TATTA-TTCAAAAATTGTTGCAAAAGTGCGACTATGATGTGCAGAAAGCGC 1015 Query 188954 AACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACAT 189013 ||| || ||||| ||||| || ||| | ||||||||| || |||||||||| | | | | Sbjct 1016 AACAAGGCATTGTTTATATTGACGAAATTGATAAAATTTCTCGAAAATCAGAGAACCCTT 1075 Query 189014 CCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAG 189073 | ||||| |||||||| ||||| || || || || || || |||||||| | ||||| | Sbjct 1076 CTATTACACGAGATGTCTCTGGAGAGGGGGTTCAACAGGCGTTATTAAAGCTGATTGAGG 1135 Query 189074 GTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTG 189133 | || ||||| ||| ||||| ||||| || |||||||| ||||| |||||| | | Sbjct 1136 GAACGGTTGCTTCAGTGCCTCCGCAAGGGGGGCGTAAACATCCTCAACAAGAATTTTTGC 1195 Query 189134 AAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACA 189193 | ||||||| || || | ||||| ||| || || |||| |||| | || Sbjct 1196 AGGTAGATACTGGAAAAATTCTCTTTATCTGTGGCGGGGCTTTTGCTGGTTTATCCAAAG 1255 Query 189194 TTATCAAGAGACGCGCTACAAA----ATCAACTTTAGGTTTTGATGATAGTGTAGATAAA 189249 | || || ||| | || | | | | || ||||||| | || | | | Sbjct 1256 TGATTGAGCAACGGGTTAACACGGGTACCGGCATT-GGTTTTGGGG-TACAGGTCAAAGG 1313 Query 189250 GTACAAGAAGAAATCAAGGATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATT 189309 | | | | ||| ||| || | | |||| | || | | || ||||| | Sbjct 1314 GGAGCGGGATAAA--AAGAGCGAGAGCGATCTATTACGCCAAGTCGAGCCAGAAGATCTC 1371 Query 189310 GTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAAC 189369 |||| | ||| | |||||||| ||||| || || |||| || | || | | | Sbjct 1372 ATTAAATTTGGACTGATTCCAGAGTTTATAGGCCGCTTACCGGTTGTTGCTGTTTTAAGT 1431 Query 189370 AAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCGCAAAACGCTATCATTAAA 189429 || | ||| || ||| ||| | | |||||| ||||| || ||| | | ||| Sbjct 1432 GAATTGGATGAAGCTGCTTTGGTGCAGATTTTACAAGAGCCTAGGAATGCTTTAACGAAA 1491 Query 189430 CAATATCAGAAATTGTTAGATATGGATGGCGTGGAATTAGAATTCCAAAAAGAAGCATTA 189489 || ||||| | ||| | || ||| |||||| ||||| || || | ||||| | Sbjct 1492 CAGTATCAAACGTTGCTCAATTGGGAAGGCGTGACTTTAGATTTTCATGATGAAGCGGTG 1551 Query 189490 GAATCAATTGCAGATGAAGCGATTGAACGTAATACTGGTGCTCGCGGATTACAATCCATT 189549 | ||||| | | ||||| | |||||| ||||||||||| ||||||| |||||| Sbjct 1552 CGGGCTATTGCTAAAAAGGCGATGGCACGTAAGACTGGTGCTCGGGGATTACGCTCCATT 1611 Query 189550 ATTGAAAATATTATGTTAGA 189569 |||||| | ||| | ||||| Sbjct 1612 ATTGAAGAGATTTTATTAGA 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591305097461696