Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023734.1 Length=35725 Score E Sequences producing significant alignments: (Bits) Value seq13157 107 4e-19 >seq13157 Length=1228 Score = 107 bits (118), Expect = 4e-19 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 15963 GCCGCATCATTTATTGCGATGGCTGCTGATGAAGTGAAGATTGCGCGCGCAGGCTTCTTT 16022 || |||||||||||||| ||||| ||||||||| | | ||||| || || || |||||| Sbjct 590 GCAGCATCATTTATTGCCATGGCAGCTGATGAAATTCAAATTGCCCGTGCTGGATTCTTT 649 Query 16023 ATGATTCACAATGCTTGGACCGGCGTTGGCGGTAACCGTAATGATATGCGTGAA 16076 |||||||||||||| ||||| || || | || || ||||| || |||||||| Sbjct 650 ATGATTCACAATGCCTGGACAGGGCTTTGGGGGAATCGTAACGACTTGCGTGAA 703 Score = 87.8 bits (96), Expect = 4e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 15534 CGCCAATTGACGGCGGTGATAAGTACACAATTCAATCAGCACTTATCCCGCTTGATAAGG 15593 |||| |||| || || || | || ||||||||||| ||| | || ||||||||||| | Sbjct 9 CGCCTATTGCGGGTGGGGAAATTTATACAATTCAATCGGCATTAATTCCGCTTGATAAAG 68 Query 15594 TGGGCACAAACTACAATGGAGTTACCAAAGATGAGCAAGCGAACAATGATGCCAAAAGCT 15653 | || || || ||||| || | | || |||||||| |||| || ||||| ||| Sbjct 69 TCGGGACCAATTACAAAGGTGAT---AATAATGAGCAAACGAAACCTGCTGCCAGTCGCT 125 Query 15654 GATTTTGAAGC-AGCGCATGATGTAAAGAT--GCCGCTTGCTTTGGATCGGTGGAATCCA 15710 ||||| | || | | | | || | | |||| | ||||| ||||| |||||||| Sbjct 126 AATTTTAATGCAAAAGAAAAAGGTGGTGTTTCGCCGTTAGCTTTTGATCGTTGGAATCCT 185 Query 15711 GACATTAAAGCGTCAGACGA 15730 | |||||||| ||||| || Sbjct 186 GCAATTAAAGCATCAGATGA 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114158154842238