Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq3947 104 2e-17 >seq3947 Length=2916 Score = 104 bits (114), Expect = 2e-17 Identities = 229/341 (67%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 106767 AAGGAATAGATCAACTACGAGAAGTTGTGGAACAACTTAAGACAAATCCATCCAGTCGTA 106826 ||||||| |||||| || ||| ||| | |||| |||| | |||||| ||| Sbjct 1204 AAGGAATTGATCAATTAAAAGATGTTATTGAACGCATTAAATCTAATCCAAATGATCGAC 1263 Query 106827 GAATGATTATTTGTTCTTGGAATGTAGCTCAGCTGAATCAAATGGCGCTTCCACCTTGTC 106886 |||| ||| | || | |||||| || | | |||||||| |||||||| |||| Sbjct 1264 GAATTATTTTAAGTGCCTGGAATCCAGTGGATATTCCACAAATGGCACTTCCACCATGTC 1323 Query 106887 ATTGTCTTGTCCAATTCTATGTGCGCAACAATACCCATCTAGATTGCCAGTTGTACCAAA 106946 ||||||| || || || ||||| ||||| || | | | |||||| || ||||||| Sbjct 1324 ATTGTCTGGTACAGTTTTATGT-CGCAA--ATGGCGAGTTGAGTTGCCAATTATACCAAA 1380 Query 106947 GATCCGCCGATATTGGGCTCGGAGTCCCGTTCAACATCGCCAGCTACTCATTTCTAATGT 107006 |||| || ||||| || |||||||| || || || ||||| ||| | | | | || Sbjct 1381 GATCAGCTGATATGGGTCTCGGAGTTCCTTTTAATATCGCATCATACGCTCTATTGACGT 1440 Query 107007 ACGTTTTGGCAAAATGGACAAATCTGACCCCAGGACGTTTTATCCATACGTTTGGAGACG 107066 || | | || | |||||| | | || || |||| | ||||| ||||| || | Sbjct 1441 ACATGATTGCTCATGTTACAAATTTAAAGCCTGGCGATTTTGTTCATACTTTTGGTGATG 1500 Query 107067 TGCATGTGTACTCGACTCATGTTGAAGCTTTGAGGGAGCAA 107107 ||| | ||| ||| ||| |||| || | | |||||| Sbjct 1501 CTCATATTTACACGAATCACATTGAGCCTCTCAAAGAGCAA 1541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521352126140360