Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq7918 123 3e-23 >seq7918 Length=32631 Score = 123 bits (136), Expect = 3e-23 Identities = 274/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Plus Query 140762 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 140821 ||||| || || |||||||||| ||| || | || ||||| || ||||| || ||| Sbjct 18042 TTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTT 18101 Query 140822 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 140881 || || || | || ||| ||||| |||||| | ||||| | ||||| || Sbjct 18102 TTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCT 18161 Query 140882 CCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 140941 || || || | || || || || || ||||| || || || || |||||||| ||||| Sbjct 18162 CCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAA 18221 Query 140942 GGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATC 141001 |||||| || ||||| | ||||| || ||| ||| || || ||| Sbjct 18222 GGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATC 18281 Query 141002 ATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAA---GCG 141058 | || | ||||| ||||| || || |||| ||||| |||| ||||| | | ||| Sbjct 18282 TTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCG 18341 Query 141059 GAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAAC 141118 | || |||||| || | || |||| | ||| || | ||||| || ||||| Sbjct 18342 GTGGC---ATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAAT 18398 Query 141119 TGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 141168 || || || || ||||| ||| |||||||| ||||| |||| ||||| Sbjct 18399 TGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538776060115600