Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8363 154 3e-32 seq3668 147 4e-30 >seq8363 Length=52898 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| | |||| |||||||| || || || |||||||| ||||| || || Sbjct 26328 ACCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCT 26387 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | || || |||| |||||| || |||||||| | || ||||||||||||||| Sbjct 26388 CAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGG 26447 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| ||||||||||| || || || |||||||||||||| || || || || Sbjct 26448 AATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGAC 26507 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || ||||| || ||||| || || || || |||||||| Sbjct 26508 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 >seq3668 Length=32275 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || |||| || ||||| || || ||||| || ||| Sbjct 30902 TACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCAC 30843 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | || ||||| | |||||| ||||| ||||||| | |||||||||||| | Sbjct 30842 TCAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTG 30783 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||| |||||||| || |||||||| || || ||| ||| || | Sbjct 30782 GAATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAA 30723 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || || || || || || || || ||||| Sbjct 30722 CTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981453873400503