Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8363 87.8 2e-12 >seq8363 Length=52898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| |||||||| |||| || ||| | | | ||||| | || || || Sbjct 26359 GTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCA-TCCTCTAATTGTTTACC 26417 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || | || | || || || || ||||| || ||||| || || ||| ||| | || Sbjct 26418 GGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATC-TTGAATTTTAGCCT 26476 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| |||||| | ||||| || |||| ||| | || || || |||| | Sbjct 26477 TAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGG 26536 Query 133642 TTTTTACGAAAATCTGCATGG 133662 |||| ||||| |||||||||| Sbjct 26537 TTTTGACGAAGATCTGCATGG 26557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483241469011480