Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5596 262 9e-65 seq6636 109 1e-18 seq3947 93.3 1e-13 seq19980 86.0 1e-11 >seq5596 Length=16775 Score = 262 bits (290), Expect = 9e-65 Identities = 445/635 (70%), Gaps = 15/635 (2%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 |||||| |||| ||||||||||| ||| ||||| || || || || |||||||| Sbjct 12874 CAATTGTCTTCATGCTTTCTTCTCTCAATGTCTGATGACTCAATCGAGGGAATTTATGAC 12815 Query 110571 GCTCTTAAAGAAACT-GCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629 || |||||| || || || ||| ||| | || |||||||| || | ||||| Sbjct 12814 ACT-TTAAAGCAATGCGCGCTAATTAGCAAATCAGCAGGTGGAATTGGCGTTAATGTTCA 12756 Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689 | |||||| |||||||| || |||| || | || || ||| | ||| || || Sbjct 12755 TTGTATTCGTTCAAAAGGGACATATATAGCTGGTACAAATGGGATTTCGAATGGTCTCGT 12696 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA 110749 || ||||| ||||| | ||| | || ||| ||||| ||||||||||||| | | Sbjct 12695 ACCTATGTTGAGAGTTTACAATAATACAGCACGTTATGTTGATCAAGGTGGTAATAAACG 12636 Query 110750 T---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 | || ||||||| ||||| | |||||||||||| |||| | ||||| || |||| Sbjct 12635 TCCTGGTGCATTTGCAGTCTATTTGGAACCTTGGCATGGAGATGTTTTTGAGTTTCTAGA 12576 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | |||||| ||| |||||| | || | ||| | |||||||| | || Sbjct 12575 TTTAAAGAAAAATACTGGAAAAGAAGAAGTTCGTGCTAGAGATATGTTTTATGCTTTATG 12516 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 |||| | || || || ||| |||||||| || | |||| ||||||||| | |||||||| Sbjct 12515 GATTCCTGACTTGTTTATGCAACGTGTTGAAAACAATGAAATGTGGTCTTTAATGTGTCC 12456 Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986 |||| | | ||| ||||| | ||| ||||| ||||| |||||| | || || Sbjct 12455 TCATAGCTGTCCAGGTCTTTATGAGACTTATGGTAAAGAATTTGAAAATCTATATATTCG 12396 Query 110987 ATATGAAAAAGAAGG-CAAGT--TTCG-CAAACAAATTCCAGCTCAAGAACTTTGGTTCA 111042 ||||||| |||||| | | | |||| ||| ||| || ||||| | ||||| Sbjct 12395 ATATGAAGCAGAAGGACGATTTATTCGTCAAGTAAA----GGCACAAGATTTATGGTTTG 12340 Query 111043 AAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATT 111101 ||| ||||||| |||||||| || ||||| |||||||| ||||||| ||| ||| | Sbjct 12339 CAATTATTGAATCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGGATGCAT-GT 12281 Query 111102 AATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 ||||| ||||| |||||| |||| | |||||||| Sbjct 12280 AATCGTAAATCGAATCAACAGAATCTTGGAACAAT 12246 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| ||||| | | ||| | || |||||||||||||||| | ||||||| Sbjct 12108 AAGTCACAAAGATAGTCACAAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCAG 12049 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 || || |||| |||| || || | ||| | ||||| || ||||| | ||||||| Sbjct 12048 TTGAAGAAGCTAAACGATCAAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGAT 11989 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAA 112755 ||||||||| ||||| ||||| |||| || | || ||||| |||||||| |||| Sbjct 11988 TAGCTGATGCCTTTATATTGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTAA 11929 Query 112756 ATGAAAAGATTTTCGAAACAATCTATT 112782 || || | || || || ||||| |||| Sbjct 11928 ATCAACAAATATTTGAGACAATTTATT 11902 >seq6636 Length=7098 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| | || |||||| || | |||||| | |||||| | |||| |||||| | Sbjct 4723 CATTTAAGAGATGATGATTTAGTCATTTTCAATCGTCAACCAACTTTGCACAAAATGAGT 4782 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| | |||||| || || || | | || |||||| | ||| | ||| Sbjct 4783 ATGATGGGTCACAGAGTCAAGGTTCTACCTTGGTCTACTTTTCGAATGAATTTGAGT--- 4839 Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||| ||||| ||||| ||||||||||| || |||||||| ||||||| || ||| Sbjct 4840 TGTACGTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACTTGCATGTTCCACAA 4899 Query 305486 TC 305487 || Sbjct 4900 TC 4901 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 304895 CATATTGCAACATTAATGGATAATGAAATTGCTGGAATTA-TGCAGGCATCTCAAAGATC 304953 ||| |||| ||||| | || ||||| || ||||||| | || || || | ||| Sbjct 4315 CATGTTGCTACATTTGTAGACAATGACATGCCTGGAATGCCTAGAGCTATG-CAGAAATC 4373 Query 304954 TGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGG 305013 || | ||| || || | ||||| ||| | || |||||||| || |||||||| || Sbjct 4374 AGGAAAACCATTGAAAGCTATTAAAGCACGTTTAAAGGGTAAAGAAGGACGTATTCGTGG 4433 Query 305014 TAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCA 305073 |||| | |||||||||||||| ||||| ||| | | ||| || ||||| || || | Sbjct 4434 TAATTTGATGGGAAAACGTGTCGATTTCTCAGCACGTACTGTCATTACACCAGA-TCCAA 4492 Query 305074 AATTA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCAG 305132 | ||| || | || || | ||||||||| | |||||| ||| |||| || |||| Sbjct 4493 ATTTACGTATAGATCAAGTCGGAGTTCCACGTTCAATTGCACAAAATTTAACTTTCCCAG 4552 Query 305133 A 305133 | Sbjct 4553 A 4553 >seq3947 Length=2916 Score = 93.3 bits (102), Expect = 1e-13 Identities = 340/525 (65%), Gaps = 12/525 (2%) Strand=Plus/Minus Query 58738 TTGTTCGTTTACAGCATCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGATG 58797 ||| || || | || ||||| ||||| ||||| |||||||| |||| | ||||| Sbjct 1541 TTGCTCTTTGAGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGAAC 1482 Query 58798 AACCAATC--CAGGtttttttCCTGTCTTTTTACACATTATATGAAGCAATACGGAGTAT 58855 || |||| |||| ||| ||| | | || || | ||||| | |||| Sbjct 1481 AA--AATCGCCAGGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTAT 1424 Query 58856 GAAACCATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGA 58915 || | ||||||||||| | ||| ||| ||||||| | | ||| || ||||| | Sbjct 1423 GATGCGATATTAAAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAA 1364 Query 58916 TTAAGAGTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCC 58975 | | | ||| ||| |||||||| || | | |||||| || ||||||||| Sbjct 1363 CTCAACTCGCCATTTGCG---ACATAAAACTGTACCAGACAATGACATGGTGGAAGTGCC 1307 Query 58976 ATTTTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCA 59035 |||| |||||| | |||||| ||||| |||||||| || ||| || || | | Sbjct 1306 ATTTGTGGAATATCCACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTA 1247 Query 59036 TTTTTAATAAGTTCTTCACAATGTTTTATTTGGTCAAATCC--ATTAGT-ATATTCAGTA 59092 |||||| |||| | || ||||| ||| |||| ||| || || ||||||| | Sbjct 1246 GATTTAATGCGTTCAATAACATCTTTTAATTGATCAATTCCTTGTTTGTCATATTCA-TG 1188 Query 59093 TTGGCAT-CAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAG 59151 | |||| | |||| | || ||| |||||||||||| ||||| || || || | Sbjct 1187 ATCGCATGTCTTATATTGGGCACCAAAATGACGCCATTGAAATCCATAAACTGGACCCAA 1128 Query 59152 AGTTCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACC 59211 | || | || ||||| ||||| | || || ||||| | || || || Sbjct 1127 ATCACCCACTTGACGCTCATTAAAACCGGATGCATCGAGGAATTCACGCGTACTGTTTCC 1068 Query 59212 ATCCCAAATATGAACATTATTATCATTAAGAGATTTATTATCTGT 59256 |||||||| | | ||| || | | ||| ||||| |||||| Sbjct 1067 GTCCCAAATTCGTATATTCTTCGCTTGAAGCAATTTAGCATCTGT 1023 >seq19980 Length=59182 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 72219 TGTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACC 72278 ||| ||||||||||| | ||||| ||| || || ||||||||| | ||||| Sbjct 40050 TGTGATGAAGAATTGACATCCATTTGTATCTTTTCCAGAATTAGCCATACTTAATAAACC 39991 Query 72279 TGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTG 72338 || ||||||||| |||||||||||||| ||| | | | |||| || ||| Sbjct 39990 CGCACTATCATGCTTTAAGGTGAAATTCTCATCTTGAAATGGTCCATCATAAATGCTTAT 39931 Query 72339 ACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTAC 72398 | || |||||||| | || | |||||| |||| | |||||||| ||||| || Sbjct 39930 AACTCCAGTTCCATCACCATGAACGAAATCACCAGCTTGTATCATAAAATCTTTAATAAC 39871 Query 72399 TCTATGGAAAGGAAC 72413 ||||||||| | ||| Sbjct 39870 TCTATGGAATGCAAC 39856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186361530380597