Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 262 9e-65
seq6636 109 1e-18
seq3947 93.3 1e-13
seq19980 86.0 1e-11
>seq5596
Length=16775
Score = 262 bits (290), Expect = 9e-65
Identities = 445/635 (70%), Gaps = 15/635 (2%)
Strand=Plus/Minus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
|||||| |||| ||||||||||| ||| ||||| || || || || ||||||||
Sbjct 12874 CAATTGTCTTCATGCTTTCTTCTCTCAATGTCTGATGACTCAATCGAGGGAATTTATGAC 12815
Query 110571 GCTCTTAAAGAAACT-GCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629
|| |||||| || || || ||| ||| | || |||||||| || | |||||
Sbjct 12814 ACT-TTAAAGCAATGCGCGCTAATTAGCAAATCAGCAGGTGGAATTGGCGTTAATGTTCA 12756
Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689
| |||||| |||||||| || |||| || | || || ||| | ||| || ||
Sbjct 12755 TTGTATTCGTTCAAAAGGGACATATATAGCTGGTACAAATGGGATTTCGAATGGTCTCGT 12696
Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA 110749
|| ||||| ||||| | ||| | || ||| ||||| ||||||||||||| | |
Sbjct 12695 ACCTATGTTGAGAGTTTACAATAATACAGCACGTTATGTTGATCAAGGTGGTAATAAACG 12636
Query 110750 T---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806
| || ||||||| ||||| | |||||||||||| |||| | ||||| || ||||
Sbjct 12635 TCCTGGTGCATTTGCAGTCTATTTGGAACCTTGGCATGGAGATGTTTTTGAGTTTCTAGA 12576
Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866
| |||||| ||| |||||| | || | ||| | |||||||| | ||
Sbjct 12575 TTTAAAGAAAAATACTGGAAAAGAAGAAGTTCGTGCTAGAGATATGTTTTATGCTTTATG 12516
Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926
|||| | || || || ||| |||||||| || | |||| ||||||||| | ||||||||
Sbjct 12515 GATTCCTGACTTGTTTATGCAACGTGTTGAAAACAATGAAATGTGGTCTTTAATGTGTCC 12456
Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986
|||| | | ||| ||||| | ||| ||||| ||||| |||||| | || ||
Sbjct 12455 TCATAGCTGTCCAGGTCTTTATGAGACTTATGGTAAAGAATTTGAAAATCTATATATTCG 12396
Query 110987 ATATGAAAAAGAAGG-CAAGT--TTCG-CAAACAAATTCCAGCTCAAGAACTTTGGTTCA 111042
||||||| |||||| | | | |||| ||| ||| || ||||| | |||||
Sbjct 12395 ATATGAAGCAGAAGGACGATTTATTCGTCAAGTAAA----GGCACAAGATTTATGGTTTG 12340
Query 111043 AAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATT 111101
||| ||||||| |||||||| || ||||| |||||||| ||||||| ||| ||| |
Sbjct 12339 CAATTATTGAATCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGGATGCAT-GT 12281
Query 111102 AATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136
||||| ||||| |||||| |||| | ||||||||
Sbjct 12280 AATCGTAAATCGAATCAACAGAATCTTGGAACAAT 12246
Score = 104 bits (114), Expect = 6e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635
|||| ||||| | | ||| | || |||||||||||||||| | |||||||
Sbjct 12108 AAGTCACAAAGATAGTCACAAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCAG 12049
Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695
|| || |||| |||| || || | ||| | ||||| || ||||| | |||||||
Sbjct 12048 TTGAAGAAGCTAAACGATCAAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGAT 11989
Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAA 112755
||||||||| ||||| ||||| |||| || | || ||||| |||||||| ||||
Sbjct 11988 TAGCTGATGCCTTTATATTGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTAA 11929
Query 112756 ATGAAAAGATTTTCGAAACAATCTATT 112782
|| || | || || || ||||| ||||
Sbjct 11928 ATCAACAAATATTTGAGACAATTTATT 11902
>seq6636
Length=7098
Score = 109 bits (120), Expect = 1e-18
Identities = 134/182 (74%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||||| | || |||||| || | |||||| | |||||| | |||| |||||| |
Sbjct 4723 CATTTAAGAGATGATGATTTAGTCATTTTCAATCGTCAACCAACTTTGCACAAAATGAGT 4782
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428
||||||| ||| | |||||| || || || | | || |||||| | ||| | |||
Sbjct 4783 ATGATGGGTCACAGAGTCAAGGTTCTACCTTGGTCTACTTTTCGAATGAATTTGAGT--- 4839
Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
|||||| ||||| ||||| ||||||||||| || |||||||| ||||||| || |||
Sbjct 4840 TGTACGTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACTTGCATGTTCCACAA 4899
Query 305486 TC 305487
||
Sbjct 4900 TC 4901
Score = 91.5 bits (100), Expect = 3e-13
Identities = 168/241 (70%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 304895 CATATTGCAACATTAATGGATAATGAAATTGCTGGAATTA-TGCAGGCATCTCAAAGATC 304953
||| |||| ||||| | || ||||| || ||||||| | || || || | |||
Sbjct 4315 CATGTTGCTACATTTGTAGACAATGACATGCCTGGAATGCCTAGAGCTATG-CAGAAATC 4373
Query 304954 TGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGG 305013
|| | ||| || || | ||||| ||| | || |||||||| || |||||||| ||
Sbjct 4374 AGGAAAACCATTGAAAGCTATTAAAGCACGTTTAAAGGGTAAAGAAGGACGTATTCGTGG 4433
Query 305014 TAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCA 305073
|||| | |||||||||||||| ||||| ||| | | ||| || ||||| || || |
Sbjct 4434 TAATTTGATGGGAAAACGTGTCGATTTCTCAGCACGTACTGTCATTACACCAGA-TCCAA 4492
Query 305074 AATTA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCAG 305132
| ||| || | || || | ||||||||| | |||||| ||| |||| || ||||
Sbjct 4493 ATTTACGTATAGATCAAGTCGGAGTTCCACGTTCAATTGCACAAAATTTAACTTTCCCAG 4552
Query 305133 A 305133
|
Sbjct 4553 A 4553
>seq3947
Length=2916
Score = 93.3 bits (102), Expect = 1e-13
Identities = 340/525 (65%), Gaps = 12/525 (2%)
Strand=Plus/Minus
Query 58738 TTGTTCGTTTACAGCATCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGATG 58797
||| || || | || ||||| ||||| ||||| |||||||| |||| | |||||
Sbjct 1541 TTGCTCTTTGAGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGAAC 1482
Query 58798 AACCAATC--CAGGtttttttCCTGTCTTTTTACACATTATATGAAGCAATACGGAGTAT 58855
|| |||| |||| ||| ||| | | || || | ||||| | ||||
Sbjct 1481 AA--AATCGCCAGGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTAT 1424
Query 58856 GAAACCATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGA 58915
|| | ||||||||||| | ||| ||| ||||||| | | ||| || ||||| |
Sbjct 1423 GATGCGATATTAAAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAA 1364
Query 58916 TTAAGAGTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCC 58975
| | | ||| ||| |||||||| || | | |||||| || |||||||||
Sbjct 1363 CTCAACTCGCCATTTGCG---ACATAAAACTGTACCAGACAATGACATGGTGGAAGTGCC 1307
Query 58976 ATTTTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCA 59035
|||| |||||| | |||||| ||||| |||||||| || ||| || || | |
Sbjct 1306 ATTTGTGGAATATCCACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTA 1247
Query 59036 TTTTTAATAAGTTCTTCACAATGTTTTATTTGGTCAAATCC--ATTAGT-ATATTCAGTA 59092
|||||| |||| | || ||||| ||| |||| ||| || || ||||||| |
Sbjct 1246 GATTTAATGCGTTCAATAACATCTTTTAATTGATCAATTCCTTGTTTGTCATATTCA-TG 1188
Query 59093 TTGGCAT-CAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAG 59151
| |||| | |||| | || ||| |||||||||||| ||||| || || || |
Sbjct 1187 ATCGCATGTCTTATATTGGGCACCAAAATGACGCCATTGAAATCCATAAACTGGACCCAA 1128
Query 59152 AGTTCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACC 59211
| || | || ||||| ||||| | || || ||||| | || || ||
Sbjct 1127 ATCACCCACTTGACGCTCATTAAAACCGGATGCATCGAGGAATTCACGCGTACTGTTTCC 1068
Query 59212 ATCCCAAATATGAACATTATTATCATTAAGAGATTTATTATCTGT 59256
|||||||| | | ||| || | | ||| ||||| ||||||
Sbjct 1067 GTCCCAAATTCGTATATTCTTCGCTTGAAGCAATTTAGCATCTGT 1023
>seq19980
Length=59182
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 72219 TGTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACC 72278
||| ||||||||||| | ||||| ||| || || ||||||||| | |||||
Sbjct 40050 TGTGATGAAGAATTGACATCCATTTGTATCTTTTCCAGAATTAGCCATACTTAATAAACC 39991
Query 72279 TGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTG 72338
|| ||||||||| |||||||||||||| ||| | | | |||| || |||
Sbjct 39990 CGCACTATCATGCTTTAAGGTGAAATTCTCATCTTGAAATGGTCCATCATAAATGCTTAT 39931
Query 72339 ACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTAC 72398
| || |||||||| | || | |||||| |||| | |||||||| ||||| ||
Sbjct 39930 AACTCCAGTTCCATCACCATGAACGAAATCACCAGCTTGTATCATAAAATCTTTAATAAC 39871
Query 72399 TCTATGGAAAGGAAC 72413
||||||||| | |||
Sbjct 39870 TCTATGGAATGCAAC 39856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186361530380597
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |