Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 111 1e-19
seq3668 86.0 4e-12
>seq8363
Length=52898
Score = 111 bits (122), Expect = 1e-19
Identities = 166/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||||| | || ||||| || || || || |||||| || || ||||| |||
Sbjct 26327 CACCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGC 26386
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| ||||||| | || || |||||||| |||||||| ||||| || || |||||| | |
Sbjct 26387 TCAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAG 26446
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCC 33699
| | |||||||| || |||||| || ||||| ||| ||||| || ||
Sbjct 26447 GAATTCCTTCTTTATCTTGAATTTTAGCCTT-AACATTTTCAATCGTGTCCGATGGCTCG 26505
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| || | || || || ||||| || || ||||| || ||||||||||| ||
Sbjct 26506 ACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATGGT 26558
>seq3668
Length=32275
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||||| | || || ||||| || ||||| ||
Sbjct 30901 ACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACT 30842
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||| ||| | || ||||||||||| || || || || ||||| || |||||| | ||
Sbjct 30841 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 30782
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| || || || | |||| || | ||||| | || |
Sbjct 30781 AATTCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAA 30723
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| |||||||| ||||| ||||| || ||||| |||||
Sbjct 30722 CTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328585111563840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |