Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3668 109 1e-18 seq8363 98.7 2e-15 >seq3668 Length=32275 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || ||||| |||||||||||||| || ||||||||| ||||| Sbjct 30688 CAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTCTGACACTATCGAAAA 30747 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||| ||||| |||||||||||| || || ||| | | ||||| Sbjct 30748 TGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTTTAATCTT 30807 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || |||||||||||| | || ||| || ||||| |||| || || || Sbjct 30808 CGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTACAATATCCAAAAGGAATC 30867 Query 206364 TAC 206366 || Sbjct 30868 AAC 30870 >seq8363 Length=52898 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || || || || || || | ||||| || || ||| Sbjct 26552 CAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCGGAC 26493 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || |||||||| |||||||||||| || || ||| Sbjct 26492 ACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAA 26433 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||| || || || || |||||| | || ||| ||| ||||| | Sbjct 26432 CGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACAATATT 26373 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||| || |||||| | || ||| | |||||| Sbjct 26372 CAGAAAGAGTCAACACTTCACTTAGTGTTGCGCCTTCGA 26334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181371428521517