Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8363 131 2e-25 seq5596 113 4e-20 seq3668 113 4e-20 >seq8363 Length=52898 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||| || || || | |||||||||| ||||| ||||||||||||| || || Sbjct 26340 GCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCC 26399 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || | |||||||||| | |||| | || |||||||||||||| || |||||||| Sbjct 26400 ATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTT 26459 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| |||||| || | | ||| | || || | ||||| ||||||| || | Sbjct 26460 ATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAAT 26519 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || ||||| |||| ||||| | ||| ||||||||| Sbjct 26520 TGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATG 26556 >seq5596 Length=16775 Score = 113 bits (124), Expect = 4e-20 Identities = 493/773 (64%), Gaps = 14/773 (2%) Strand=Plus/Plus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 ||||||| ||||| | | ||| |||| |||||| | || |||||||| || |||| Sbjct 11254 CAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTT 11313 Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668 | || || | ||| | | ||||| || |||| | | || | || |||| Sbjct 11314 TAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCG 11373 Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728 | || || ||| || ||||| |||||||| || ||||| || || || ||||| | Sbjct 11374 CTACATGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTT 11433 Query 146729 CAATCATGCGTTTTGTCTTC-ATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCT 146787 ||| || || ||| | |||||||| | ||||| || | |||| ||| Sbjct 11434 GAATT-TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCA 11492 Query 146788 GGAATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTC 146846 ||||| | ||||| ||| || ||||| || | ||| ||| || ||| | || || Sbjct 11493 GGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATT-TGATTCTTCATGTC 11551 Query 146847 GGG--CGTGTAAAG---GTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACT 146901 | |||| ||| || ||| | | ||| | || ||||| || ||| Sbjct 11552 ATCATCCCATAAACCACGTTCTGTCAAAT-----CCTTAATAAGATGATGATTAACAACT 11606 Query 146902 TGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGAC 146961 |||||||| || |||||||| | ||| ||||| || ||| | || |||||| | Sbjct 11607 TGAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTC 11666 Query 146962 TCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAA 147021 |||||||| ||||| || || || || | ||| || ||||| || | ||||||||| Sbjct 11667 TCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAA 11726 Query 147022 TTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG 147081 || || ||||| | ||| || || || || | || ||| ||||||| | Sbjct 11727 TTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTT 11786 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAAC 147141 || ||| | |||||| || || || | | ||| | |||| || | || Sbjct 11787 GGTGTCTTTTCCCACATATCATATTGTAATATACCTTTTGATACTGGACATCCTTCATAC 11846 Query 147142 GTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTAT 147201 || || |||| | |||||||||||||| | ||| | |||||||| || Sbjct 11847 GTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAA 11906 Query 147202 ATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGC 147261 || || || ||||||| |||| | | ||||| || |||||| ||||| | | Sbjct 11907 ATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATGGCATTCTC 11966 Query 147262 AGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG 147314 | | | ||||||||| || || || || || || | ||||| || ||||| Sbjct 11967 ATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATG 12019 >seq3668 Length=32275 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| || ||||| || |||||||| |||| ||||| |||||| Sbjct 30883 AACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTC 30824 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | |||||| ||| ||||||||||| || || |||||||| || Sbjct 30823 CAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 30764 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| || | | ||| | ||| || | ||||| ||||| | || | ||||| Sbjct 30763 GATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTT 30704 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| | ||||| | ||| || ||||| Sbjct 30703 ACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476434395117720