Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 109 5e-19
seq8363 91.5 1e-13
seq3668 86.0 6e-12
>seq9081
Length=2203
Score = 109 bits (120), Expect = 5e-19
Identities = 243/360 (68%), Gaps = 11/360 (3%)
Strand=Plus/Plus
Query 110036 TATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTC-AT 110094
|||||||| || | ||| || || ||||| |||||||| || || || | |||| ||
Sbjct 54 TATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAAT-TAATTCCAT 112
Query 110095 AAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCG 110154
||| ||| ||||| || ||| || ||||| ||||||||| || || |
Sbjct 113 AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAATAAATG 172
Query 110155 ATCCGCCACAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAAC 110214
||| || || |||||||| || || |||| | | |||||||| ||||| ||
Sbjct 173 ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTAC 232
Query 110215 TGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATACTCAA 110274
||| || ||| ||| ||||| ||||||||||| | ||||||||| || || ||||
Sbjct 233 TGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAAT-TTCAA 291
Query 110275 CACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAGGC 110334
|| || | |||| ||| | ||| | | | || | || || | ||| ||
Sbjct 292 CAACTCGTTCTT-------TTGGTGGCTTCTGAATAAGATGT-TTGTACATTAAGCATGC 343
Query 110335 AAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCGGG 110394
||| ||| || | |||||| ||||| ||||| ||||| || | |||||||||| ||
Sbjct 344 AAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGG 403
>seq8363
Length=52898
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
|| |||||| | || || ||||| || || || || | || || |||||||||| ||
Sbjct 26559 CACCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GC 26501
Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289
|| || | || || || | || || |||||| |||||||| || || || || |
Sbjct 26500 CATCGGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAG 26441
Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349
|||| ||| || | || | | ||| |||||| | || |||| | | | ||||| |
Sbjct 26440 ATCAACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACT 26381
Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||||||||| ||||| || || |||| ||||||||
Sbjct 26380 ACAATATTCAGAAAGAGTCAACACTTCACTTAGTGTT 26344
>seq3668
Length=32275
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
||| |||||| | || || ||||||||||| || ||| | ||||| | ||||| | |||
Sbjct 30670 CAAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTG-AGC 30728
Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289
| | || |||||||| | || || ||| || || ||||| || || || || |
Sbjct 30729 CTTCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAG 30788
Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349
|||| ||| | | || | || || |||||| | ||||||| | | | || || |
Sbjct 30789 ATCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACT 30848
Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383
||||||| ||||| ||||| || | ||||| ||
Sbjct 30849 ACAATATCCAAAAGGAATCAACATTGCATTTGGT 30882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444929286668640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |