Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq9081 109 5e-19 seq8363 91.5 1e-13 seq3668 86.0 6e-12 >seq9081 Length=2203 Score = 109 bits (120), Expect = 5e-19 Identities = 243/360 (68%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 110036 TATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTC-AT 110094 |||||||| || | ||| || || ||||| |||||||| || || || | |||| || Sbjct 54 TATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAAT-TAATTCCAT 112 Query 110095 AAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCG 110154 ||| ||| ||||| || ||| || ||||| ||||||||| || || | Sbjct 113 AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAATAAATG 172 Query 110155 ATCCGCCACAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAAC 110214 ||| || || |||||||| || || |||| | | |||||||| ||||| || Sbjct 173 ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTAC 232 Query 110215 TGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATACTCAA 110274 ||| || ||| ||| ||||| ||||||||||| | ||||||||| || || |||| Sbjct 233 TGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAAT-TTCAA 291 Query 110275 CACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAGGC 110334 || || | |||| ||| | ||| | | | || | || || | ||| || Sbjct 292 CAACTCGTTCTT-------TTGGTGGCTTCTGAATAAGATGT-TTGTACATTAAGCATGC 343 Query 110335 AAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCGGG 110394 ||| ||| || | |||||| ||||| ||||| ||||| || | |||||||||| || Sbjct 344 AAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGG 403 >seq8363 Length=52898 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || ||||| || || || || | || || |||||||||| || Sbjct 26559 CACCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GC 26501 Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || || | || || || | || || |||||| |||||||| || || || || | Sbjct 26500 CATCGGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAG 26441 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| ||| || | || | | ||| |||||| | || |||| | | | ||||| | Sbjct 26440 ATCAACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACT 26381 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||| ||||| || || |||| |||||||| Sbjct 26380 ACAATATTCAGAAAGAGTCAACACTTCACTTAGTGTT 26344 >seq3668 Length=32275 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || || ||||||||||| || ||| | ||||| | ||||| | ||| Sbjct 30670 CAAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTG-AGC 30728 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | || |||||||| | || || ||| || || ||||| || || || || | Sbjct 30729 CTTCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAG 30788 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| ||| | | || | || || |||||| | ||||||| | | | || || | Sbjct 30789 ATCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACT 30848 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||||| ||||| ||||| || | ||||| || Sbjct 30849 ACAATATCCAAAAGGAATCAACATTGCATTTGGT 30882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444929286668640