Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 122 9e-23
seq3668 111 2e-19
seq9081 98.7 1e-15
>seq8363
Length=52898
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| || |||||||| | ||| || || || || || ||||| ||||||||||
Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || | ||||| || ||||| ||||| || || ||||| || ||
Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| |||||||| ||||||||||| || || || | ||||| || | || ||
Sbjct 26449 ATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACT 26508
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| ||||| || ||||| || || ||||| ||||| || |||||
Sbjct 26509 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555
>seq3668
Length=32275
Score = 111 bits (122), Expect = 2e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576
|| ||||||||||| || |||||||| | | || | || || | ||||| ||
Sbjct 30870 GTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCCAATTGTTTACCA 30811
Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636
|| || || ||||| || ||||| || || || |||||||| ||||| || ||| |||
Sbjct 30810 GCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTG 30751
Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696
|| || | ||||| || | || || || | ||| ||||||||||| ||||| |||
Sbjct 30750 ACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTT 30691
Query 134697 TTAACGAAAATTTGCATTTTG 134717
|| ||||| |||||||| |||
Sbjct 30690 TTGACGAAGATTTGCATCTTG 30670
>seq9081
Length=2203
Score = 98.7 bits (108), Expect = 1e-15
Identities = 285/434 (66%), Gaps = 25/434 (6%)
Strand=Plus/Plus
Query 21427 TATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATA 21486
|||||||| ||| || ||||||||| || || || || || |||| ||| || ||||
Sbjct 54 TATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAATTCCATA 113
Query 21487 AAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTC-AATTCCACGCACAAACG 21545
|| || ||||| ||| | | | ||||| || | ||||| | | ||| |
Sbjct 114 AATGAGAATGGATTTTTGGTATTATAG-ACCTTGTCAAGTCCCAATTCGCCTAATAAATG 172
Query 21546 ATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGAC 21605
||| || |||||||||||||||| | |||| || |||||||||||||||| | ||
Sbjct 173 ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTAC 232
Query 21606 CGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCGTG 21665
|| || || || || ||||| ||||| || || || || || ||||
Sbjct 233 TGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGAT--------- 283
Query 21666 TATTTCACCGGCGGACAATTTG-TCTT---GAGGCT--CGATGTATTTG-TTGTAGTAGA 21718
|||||| |||| | | |||| | |||| || | || ||||| |
Sbjct 284 AATTTCA-------ACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTGTACATTA 336
Query 21719 GACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGA 21778
|| ||||| | || | ||| ||||| | |||||| | ||| || ||| || |
Sbjct 337 AGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCA 396
Query 21779 GACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaa 21838
||| |||||||| || || || ||||| |||| ||||| |||||||| || ||| |
Sbjct 397 AACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGA 456
Query 21839 aCACGCCCTCCACA 21852
| | ||||| |||
Sbjct 457 AAATCCCCTCGACA 470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505210916146040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |