Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq8363 122 9e-23 seq3668 111 2e-19 seq9081 98.7 1e-15 >seq8363 Length=52898 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||||||| | ||| || || || || || ||||| |||||||||| Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||||| || ||||| ||||| || || ||||| || || Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||||||||| || || || | ||||| || | || || Sbjct 26449 ATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACT 26508 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || ||||| || || ||||| ||||| || ||||| Sbjct 26509 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 >seq3668 Length=32275 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || ||||||||||| || |||||||| | | || | || || | ||||| || Sbjct 30870 GTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCCAATTGTTTACCA 30811 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || || ||||| || ||||| || || || |||||||| ||||| || ||| ||| Sbjct 30810 GCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTG 30751 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | || || || | ||| ||||||||||| ||||| ||| Sbjct 30750 ACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTT 30691 Query 134697 TTAACGAAAATTTGCATTTTG 134717 || ||||| |||||||| ||| Sbjct 30690 TTGACGAAGATTTGCATCTTG 30670 >seq9081 Length=2203 Score = 98.7 bits (108), Expect = 1e-15 Identities = 285/434 (66%), Gaps = 25/434 (6%) Strand=Plus/Plus Query 21427 TATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATA 21486 |||||||| ||| || ||||||||| || || || || || |||| ||| || |||| Sbjct 54 TATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAATTCCATA 113 Query 21487 AAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTC-AATTCCACGCACAAACG 21545 || || ||||| ||| | | | ||||| || | ||||| | | ||| | Sbjct 114 AATGAGAATGGATTTTTGGTATTATAG-ACCTTGTCAAGTCCCAATTCGCCTAATAAATG 172 Query 21546 ATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGAC 21605 ||| || |||||||||||||||| | |||| || |||||||||||||||| | || Sbjct 173 ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTAC 232 Query 21606 CGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGGCGTG 21665 || || || || || ||||| ||||| || || || || || |||| Sbjct 233 TGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGAT--------- 283 Query 21666 TATTTCACCGGCGGACAATTTG-TCTT---GAGGCT--CGATGTATTTG-TTGTAGTAGA 21718 |||||| |||| | | |||| | |||| || | || ||||| | Sbjct 284 AATTTCA-------ACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTGTACATTA 336 Query 21719 GACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGA 21778 || ||||| | || | ||| ||||| | |||||| | ||| || ||| || | Sbjct 337 AGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCA 396 Query 21779 GACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaa 21838 ||| |||||||| || || || ||||| |||| ||||| |||||||| || ||| | Sbjct 397 AACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGA 456 Query 21839 aCACGCCCTCCACA 21852 | | ||||| ||| Sbjct 457 AAATCCCCTCGACA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505210916146040