Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq8700 150 3e-31 >seq8700 Length=5779 Score = 150 bits (166), Expect = 3e-31 Identities = 324/477 (68%), Gaps = 8/477 (2%) Strand=Plus/Minus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 |||| || ||||| || || |||||||| || || || || || | |||| Sbjct 790 TCTATCAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAA 731 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 ||||| || || ||| || |||||||| || |||||| | ||||| || ||||| Sbjct 730 AGACACCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCA 671 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 | | || ||| | || || || ||| | || ||| ||||||| |||| || |||| Sbjct 670 TTATTAATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATG 611 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTA 161552 | || ||| || | ||||||| |||||| || || || || || || | | | | Sbjct 610 AATCGCCAAGAAGAGGTGAGAATTTCGTGACACGAAAAATCACCAGATCAGTCGCTAAAA 551 Query 161553 TT--AGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTG 161610 || | || | | | || ||| | | | || |||||||| | |||| ||| ||||| Sbjct 550 TTTCATTAAATCAACA-AGAATTCT-TGGAACTTGGTAATCTTGATTCAAAACGTGATTG 493 Query 161611 GGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGA 161670 |||||||||| | ||||| || || ||||||||| |||||||||| ||||| | || || Sbjct 492 GGGTCATGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGA 433 Query 161671 TGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTG--AAGGACTTTGTAGAGGCATCT 161728 |||| ||| ||||| ||||| | ||| | ||||| || ||||| || || || Sbjct 432 AGACTTTGTAATTGCTACAGG-AGAGACT-CGCAGTGTTCGAGAGTTTGTCGAAGCTTCA 375 Query 161729 GCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGTGAAGGATTGGATGAAGTGGGT 161785 | | | |||| | | | ||||| |||| ||| ||| | |||||||| ||| Sbjct 374 TTTAGACATATTGGAAAGGAAATTGAATGGCGTGGTAGTGGAGTTGATGAAGTTGGT 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729658823490760