Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5596 531 7e-146 seq9081 262 5e-65 >seq5596 Length=16775 Score = 531 bits (588), Expect = 7e-146 Identities = 1119/1649 (68%), Gaps = 31/1649 (2%) Strand=Plus/Plus Query 68400 TTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCAT 68459 |||||| | || || ||||| || ||||| || || | ||||||| || ||||| || Sbjct 11285 TTTTGTTCTTAAGTAATACATTCCAGTTTTAAGTCCCAACTTCCATCCATAAAAATGAAT 11344 Query 68460 ACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATC 68519 | ||| | ||| |||| |||| || |||| ||||||||| | |||||||||||||| Sbjct 11345 AGATGTCAATTTCCCATAATTTGGTTCCGCTACATGAATATTGAATGATTGACTTTGATC 11404 Query 68520 GATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAAT 68579 ||| |||||||| | ||| || ||||||| || |||| || |||||||| | Sbjct 11405 GATAAAAGCTCCACGATCAGCTGCCATTTGAATTTGTGTCTTGACAGATATTTCCCATAC 11464 Query 68580 AGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGGATCCACC 68636 || ||| |||| | ||| |||||||| |||| || || ||| || || ||| Sbjct 11465 TGTTTTATAAATGTTTTTAATATCATCAGGAATTTCATCAATAGCTTGTATTGAGCCATT 11524 Query 68637 ATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCT 68696 || |||||| |||||| || ||||||| ||| || | || || ||| | | Sbjct 11525 ATTTCCAATAATTTGATTCTTCATGTCATCATCCCATAAACCACGTTCTGTCAAATCCTT 11584 Query 68697 AAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATT 68756 || ||||| ||||||| | |||||| || ||| | ||| | |||| | |||| ||| Sbjct 11585 AATAAGATGATGATTAACAACTTGAAACTCTCCACTAAGCACACGACGATTATAAACATT 11644 Query 68757 ACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGG 68816 ||| || || ||||| | | |||||||| || | ||| ||||| |||||||||||||| Sbjct 11645 ACTTGTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGG 11704 Query 68817 CATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATG 68876 ||| ||||| | || || ||| | ||||||| | ||||||| ||||||| ||| Sbjct 11705 CATTGGTGCTAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTA-ATG 11763 Query 68877 -TTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGT 68935 || ||||||||| | |||| |||| | ||| | ||| ||||||| || || | Sbjct 11764 CTTCCCAATCCCACAAGTCAGTTGGTGTCTTTTCCCACATATCATATTGTAATATACCTT 11823 Query 68936 TACTTGCATA-TG---ATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 ||| ||| || |||| | ||| || ||||||| ||| | |||||| | |||| Sbjct 11824 ---TTG-ATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCA 11879 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 69051 || || | |||||| || || ||||||||||| || || || | | ||| | || Sbjct 11880 CAGCTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTA 11939 Query 69052 GCTTC--TAGACTATCGAATGG-ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 ||||| |||| ||| |||| || | | | ||||| ||||| || ||||| ||| Sbjct 11940 GCTTCATCAGAC--TCGTATGGCATTCT-CATCAATATAAAGGCATCAGCTAATCCTTGA 11996 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 | ||||| ||||| || | |||||| ||||| | || ||||||| || ||||| Sbjct 11997 ATTCCAATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAG 12056 Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGT 69228 |||||| || ||||||||||| | ||||| |||| || || ||||| | | Sbjct 12057 AAATTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAAT 12116 Query 69229 TTGAGAAAATCAAATCGT---CCATCT---ATAACAAACATATTCAGTGCTACAGATGCT 69282 || | |||||| || | | || | | ||||||||||| | || | |||||| Sbjct 12117 TTATGGAAATCATATTCTTTACGATTTGGCTTGACAAACATATTTAAGGCAATTGATGCT 12176 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 | |||||| || || || |||| | ||| |||||| | || || ||||||| ||| Sbjct 12177 AAATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTT 12236 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG-TTACAGGCGTCCTTGTA 69401 || ||| || || ||||| || ||||| | ||| | ||||| || ||||| || Sbjct 12237 GAGCAACGGATTGTTCCAAGATTCTGTTGATT-CGATTTACGATTACATGCATCCTTATA 12295 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT 69461 || ||| | || || || || |||| |||||||| ||||| | ||| | | Sbjct 12296 CAGCATATAAGGTGTTCCTGTCTCAACTTGAGATTCAATAATTGCAAACCATAAATCTTG 12355 Query 69462 AGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCG 69519 || |||| | | | ||| | || ||| ||||||| | ||||||| ||| Sbjct 12356 TGCCTTTACT--TGACGAATAAATCGTCCTTCTGCTTCATATCGAATATATAGATTTTCA 12413 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||| | || || |||| | || ||||| || |||||||| || |||||| Sbjct 12414 AATTCTTTACCATAAGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAAGACCAC 12473 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| | | ||| |||| |||||| | || |||||||| | ||| ||| | | Sbjct 12474 ATTTCATTGTTTTCAACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATA 12533 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 ||||| | | | |||||| ||||| |||||||| || | ||| |||||||| | || | Sbjct 12534 TCTCTAGCACGAACTTCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACA 12593 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 || |||||| ||||| | ||| | || | | || || |||||||| || || ||| Sbjct 12594 TCTCCATGCCAAGGTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGA 12653 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | || | || || ||||| || ||||||| ||| || | | |||||| || | Sbjct 12654 TCAACATAACGTGCTGTATTATTGTAAACTCTCAACATAGGTACGAGACCATTCGAAATC 12713 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 |||||||| |||| ||||| | ||| ||| |||||| | || | | || ||| Sbjct 12714 CCATTTGTACCAGCTATATATGTCCCTTTTGAACGAATACAATGAACATTAACGCCAATT 12773 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || ||||| ||| ||||| || || | || || |||||||| || ||||| || Sbjct 12774 CCACCTGCTGATTTGCTAATTAGCGCGCATTGCTTTAAAGTGTCATAAATTCCCTCGATT 12833 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||| ||| |||||||| || ||||| |||| || || || | || Sbjct 12834 GAGTCATCAGACATTGAGAGAAGAAAGCATGAAGACAATTGAGGACGTGGTGTAGCTGCT 12893 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAA 70028 || | ||| || ||||| || ||||| Sbjct 12894 GCGAAAAGTGTTGGTGATGCATGTGTGAA 12922 Score = 156 bits (172), Expect = 6e-33 Identities = 322/472 (68%), Gaps = 18/472 (4%) Strand=Plus/Plus Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTA 70093 ||||||| | |||||||||||| |||||||||| || |||||| |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACA 70153 || || | ||| | |||||| || || |||||| | |||| || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 70154 GGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 70213 | || | ||| | |||||||| ||||||||||||||| || |||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 70214 TAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGA 70273 | ||| | ||||| ||| ||| || ||| ||| || | || | | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAA--TTCGC 13227 Query 70274 TAATC---GGAGATCGTTTACCATTTTTAG-GATTAA-----CATAGTTGAATAAATCTT 70324 ||||| || || |||| | ||||| ||| | |||| || | | ||| | Sbjct 13228 TAATCATTGGGGA---TTTA--GTCTTTAGATATTCATTTTCCATA-TTATAAAGATCAT 13281 Query 70325 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGG 70384 |||| || |||||||| |||| || || || ||||| | || || ||||| ||||| | Sbjct 13282 CCATGACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTG 13341 Query 70385 CTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTA 70444 | |||| || |||||| || | ||| | |||||| || |||||| |||| || |||| Sbjct 13342 CAGCTAAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTA 13401 Query 70445 ACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTT 70496 | |||| | ||| ||||| ||||| |||| | ||| | || ||||| Sbjct 13402 AATTATCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 262 bits (290), Expect = 5e-65 Identities = 573/843 (68%), Gaps = 35/843 (4%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTC--TCGAAAAAATTAGTTTTGC 39368 ||||| ||||| | ||||| ||||| ||||| |||| || || || ||||| |||| Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACC--TTTCGTTCAAAGAAGTTAGTCTTGC 90 Query 39369 CTTCCAATGATATATTTTCCATGAAATCA-AACGGATTAGTTGCATTATAtttttttttA 39427 | || | ||| || |||||| |||| | || ||||| | | |||||| || | | Sbjct 91 CCTCAAGTGAAATTAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCA 149 Query 39428 AATCCTAATTCTGA-AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTC 39486 | ||| ||||| ||| ||| ||| || || ||||| |||||| ||| | || Sbjct 150 AGTCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATC 208 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 ||||||||| || | | || ||||| || || || || | ||| || ||||| || | Sbjct 209 ACAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTT 268 Query 39547 TACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGC--AATAA-ATG 39603 ||| |||||||| || || | || || || | ||||| | | ||||| ||| Sbjct 269 TACAGCCTCTGTGATAAT---TTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATG 325 Query 39604 TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663 ||| |||||||||| || ||||||| ||| || || || ||||| ||| | ||| || Sbjct 326 TTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATT 385 Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGA 39723 || ||||| | || ||||||| |||||||| || | |||||| || || ||||| Sbjct 386 TGAGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCT 445 Query 39724 TCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT 39783 |||| |||||| || || || || || ||||| |||| || || || || | ||| Sbjct 446 TCCACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGC 505 Query 39784 ATCATTA-TG--TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 || ||| || |||||| || ||||| || || || |||||||| || || | || Sbjct 506 ATGCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGT 565 Query 39841 TTCTATAGCATT---AAAGAGATAA---TGTTTTTCATCACTATCTTTAACATATGTATC 39894 || |||||||| |||| | | || ||| |||||| | ||| || || Sbjct 566 CTCAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCAC------GGATATAAGTTTC 619 Query 39895 TATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 |||| | ||||| ||||| || | ||||| || || || || ||||| ||||| Sbjct 620 AATTAGAATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAA 679 Query 39955 ACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCAC 40014 ||| ||||| || | ||| || || || |||| ||| || || ||||| || Sbjct 680 GAATCGAGCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTAC 739 Query 40015 TATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAA---ATATTTTTCATC 40071 || || || || ||||| ||||| ||||| ||| ||||| | || | ||| Sbjct 740 AATGCCGTCTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATC 799 Query 40072 GGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131 | ||||| | ||||||| | ||||||||||||| ||| |||||||| ||||||| Sbjct 800 ---CTTTAATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCA 856 Query 40132 AAA 40134 || Sbjct 857 GAA 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686653982594280