Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq7918 140 4e-28 >seq7918 Length=32631 Score = 140 bits (154), Expect = 4e-28 Identities = 274/401 (68%), Gaps = 8/401 (2%) Strand=Plus/Plus Query 143139 CCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGG 143198 ||||| ||||| || || | || ||||| || ||||| ||||| || | || | Sbjct 18054 CCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAACACTAAC 18113 Query 143199 AGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACT 143258 || || ||||| ||||||| | |||||| | | || ||||| || || || || Sbjct 18114 AGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCGCGCACA 18173 Query 143259 CCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCA 143318 ||||||||||| || ||||| || || |||||||| ||||| | ||||||||| || Sbjct 18174 CCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAATACAGCCG 18233 Query 143319 GTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCCCGCGTTA 143378 ||||| | | |||||| | || ||| || || | | | || || ||| Sbjct 18234 GTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCGGCATTA 18293 Query 143379 ATGCCAATACCTGCACGCTTACTGATATACTCAATAATGCTTGCACTGGCTTTG---TTA 143435 || |||||||| ||||| | | || || | | |||| |||||||| || || Sbjct 18294 ATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATG---GCACTGGCGGTGGCATTG 18350 Query 143436 ATTGACT-TAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGACGAGTCGG 143494 || || | ||| | || || || || | |||||||||||||| ||||| || || Sbjct 18351 ATGGAGTCTAAACTA-TCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGG 18409 Query 143495 TGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTT 143535 |||||| | || |||||||| |||||||||| ||||||| Sbjct 18410 GGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAATTT 18450 Score = 100 bits (110), Expect = 3e-16 Identities = 228/340 (67%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 141316 GGCACGTTTCATGATTGCTTCATCAAGAACAATTTCATCAAAGATCTTAGCAGGATCATT 141375 ||||||||||| ||| | | || || | || || | |||||| | |||||||||| Sbjct 15652 GGCACGTTTCAGGATCTCCTGATTGAGCATGATATCCTTAAAGATGACATCAGGATCATT 15711 Query 141376 GAACAAGTTACGCATGATGTGGGTGTAAGAACGAGAGTGAATCGTTTCAGAGAACGTCCA 141435 || | || || |||||||| || || ||||| |||||||| ||||| || || | ||| Sbjct 15712 GACAATATTGCGAATGATGTGAGTATAGGAACGGGAGTGAATGGTTTCTGAAAAGGCCCA 15771 Query 141436 AGTCTGGTTCCAAGTATCCAAAGAAGGATCGCTAATCAGAGCA--GACAAGACAGCAGCA 141493 ||| | | |||| || || ||| | | | ||| || | || | ||| || Sbjct 15772 AGTTTCGATCCAGGTTTC-----AAGCTCTGGCAGTGAGACCAGGGGTAAAAAAGCGACA 15826 Query 141494 --GGTGCT-CGACCTTGAATTGAATCCAATAAGCTCTGATACTTCAAGTTGTTGATAAAA 141550 | ||| || |||||||| ||||||| | | | || || || | ||| | |||||| Sbjct 15827 TTAGGGCTGCGCCCTTGAATCGAATCCAGCAGGGTTTGGTATTTTAGATTGCTAATAAAA 15886 Query 141551 ATATTTTGCTGATGAACTGGGAGCTTCTCATATTGAGCTCGGTCAGTCATTAAGTTAACT 141610 |||| || | |||| || |||| || || | || ||| | | | ||| Sbjct 15887 ATATGCTGTTCATGAGGAGGTAGCTGCTGGTAGTCGATGCGATCACGCGAGACATCAACC 15946 Query 141611 TCTTCTGGGCGCCAGAAGAAACTCAACTGCTTTTCAATTA 141650 |||||||||||||| || ||| | ||| |||||||||| Sbjct 15947 TCTTCTGGGCGCCAAAAAAAAGAGAGCTGTTTTTCAATTA 15986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544761039088920