Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_027340.1
Length=162160
Score E
Sequences producing significant alignments: (Bits) Value
seq7918 89.7 5e-13
>seq7918
Length=32631
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 58545 CCGGTATGAGTCATCTCACCGTCGCGGATAGAGGAACCCAGGGCACGGATAGCGCCGAAG 58604
||||||||| ||||||| |||| || | | || | ||| ||||| ||||
Sbjct 18231 CCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCGGCA 18290
Query 58605 TCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTGCCAGTAGCAGTA 58664
| || || ||||| ||||| | ||| ||||||||||| || || || | || ||| |
Sbjct 18291 TTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCGGTGGCATTG 18350
Query 58665 ATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAACTGACGGGTACGG 58724
||| ||| | | || || ||| ||| | ||||| ||||| || |||||||| ||
Sbjct 18351 ATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGG 18410
Query 58725 GTACGCACGCCTGCCATGATAGGTGTTGGGAG 58756
||||| || || ||||| || || || || ||
Sbjct 18411 GTACGAACACCCGCCATAATCGGAGTAGGCAG 18442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 518591550590400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |