Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq7918 89.7 5e-13 >seq7918 Length=32631 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 58545 CCGGTATGAGTCATCTCACCGTCGCGGATAGAGGAACCCAGGGCACGGATAGCGCCGAAG 58604 ||||||||| ||||||| |||| || | | || | ||| ||||| |||| Sbjct 18231 CCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCGGCA 18290 Query 58605 TCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTGCCAGTAGCAGTA 58664 | || || ||||| ||||| | ||| ||||||||||| || || || | || ||| | Sbjct 18291 TTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCGGTGGCATTG 18350 Query 58665 ATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAACTGACGGGTACGG 58724 ||| ||| | | || || ||| ||| | ||||| ||||| || |||||||| || Sbjct 18351 ATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGG 18410 Query 58725 GTACGCACGCCTGCCATGATAGGTGTTGGGAG 58756 ||||| || || ||||| || || || || || Sbjct 18411 GTACGAACACCCGCCATAATCGGAGTAGGCAG 18442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518591550590400