Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq7918 123 3e-23 seq11528 96.9 4e-15 >seq7918 Length=32631 Score = 123 bits (136), Expect = 3e-23 Identities = 267/398 (67%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 14856 CCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAATACCAAA 14915 || ||||| ||||| || | || ||||| || || || ||||| ||||| || || Sbjct 18054 CCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAACACTAAC 18113 Query 14916 AGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCACGGACA 14975 ||| ||| || || ||||||| | ||||| | || ||||| || || || || ||| Sbjct 18114 AGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCGCGCACA 18173 Query 14976 CCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATTACGCCA 15035 |||||||| || || ||||| || || || || |||||||| | |||||||| ||| Sbjct 18174 CCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAATACAGCCG 18233 Query 15036 GTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCGGCGTTG 15095 ||||| | || || | ||| |||| || || ||| | ||||| || Sbjct 18234 GTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCGGCATTA 18293 Query 15096 ATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGC---TGCATTA 15152 || || ||||| || || | || || || | || || ||| || ||||| Sbjct 18294 ATCCCAATACCGGCACGTTGAGAGACGTATTTCACAA---TGGCACTGGCGGTGGCATTG 18350 Query 15153 ATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTAGGA 15212 || || | | ||| || || || | |||||||| ||||| ||||| || || Sbjct 18351 ATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGG 18410 Query 15213 GTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAAT 15250 |||||| | || ||||||||||| ||||||| ||||| Sbjct 18411 GTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 >seq11528 Length=3627 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 103768 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 103827 ||||||||||| | || |||||| | |||||| ||||||||||||| ||||||||||| Sbjct 135 TGGTGGCCCCTCCCCGATTTGAACGGGGGACCAAACGATTATGAGTCGTCTGCTCTAACC 76 Query 103828 ACTGAGCTAAGGGGCC 103843 |||||||||||||||| Sbjct 75 ACTGAGCTAAGGGGCC 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505601171322280