Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_027344.1
Length=158099
Score E
Sequences producing significant alignments: (Bits) Value
seq7918 123 3e-23
seq11528 96.9 4e-15
>seq7918
Length=32631
Score = 123 bits (136), Expect = 3e-23
Identities = 267/398 (67%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 14856 CCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAATACCAAA 14915
|| ||||| ||||| || | || ||||| || || || ||||| ||||| || ||
Sbjct 18054 CCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAACACTAAC 18113
Query 14916 AGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCACGGACA 14975
||| ||| || || ||||||| | ||||| | || ||||| || || || || |||
Sbjct 18114 AGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCGCGCACA 18173
Query 14976 CCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATTACGCCA 15035
|||||||| || || ||||| || || || || |||||||| | |||||||| |||
Sbjct 18174 CCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAATACAGCCG 18233
Query 15036 GTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCGGCGTTG 15095
||||| | || || | ||| |||| || || ||| | ||||| ||
Sbjct 18234 GTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCGGCATTA 18293
Query 15096 ATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGC---TGCATTA 15152
|| || ||||| || || | || || || | || || ||| || |||||
Sbjct 18294 ATCCCAATACCGGCACGTTGAGAGACGTATTTCACAA---TGGCACTGGCGGTGGCATTG 18350
Query 15153 ATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTAGGA 15212
|| || | | ||| || || || | |||||||| ||||| ||||| || ||
Sbjct 18351 ATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGG 18410
Query 15213 GTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAAT 15250
|||||| | || ||||||||||| ||||||| |||||
Sbjct 18411 GTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448
>seq11528
Length=3627
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 103768 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 103827
||||||||||| | || |||||| | |||||| ||||||||||||| |||||||||||
Sbjct 135 TGGTGGCCCCTCCCCGATTTGAACGGGGGACCAAACGATTATGAGTCGTCTGCTCTAACC 76
Query 103828 ACTGAGCTAAGGGGCC 103843
||||||||||||||||
Sbjct 75 ACTGAGCTAAGGGGCC 60
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505601171322280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |