Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 241 1e-58
seq9081 190 2e-43
seq2126 159 3e-34
>seq3947
Length=2916
Score = 241 bits (266), Expect = 1e-58
Identities = 404/573 (71%), Gaps = 10/573 (2%)
Strand=Plus/Plus
Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925
|||||| | ||||| |||||||||||||| | ||| |||||||| || ||||| | ||
Sbjct 1122 GGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATAAGAC- 1180
Query 40926 ATGTACTC-TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG-A 40983
||| || ||| ||| ||| ||||||| ||||||||| | ||||| || ||| |
Sbjct 1181 ATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGA-ACGCA 1239
Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043
||||||| |||| || ||||| || || || | || ||||| ||| ||| | |
Sbjct 1240 TTAAATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCAGTGGATATTC 1299
Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAA 41102
|||||| | ||||| ||||| |||| || |||||||| || ||||| ||
Sbjct 1300 CACAAATGGCACTTCCACCATGTCA-TTGTCTGGTACAGTTTTATGTCGCAAATGGCGAG 1358
Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162
|| || ||||| || |||||||||| ||| ||||| || || || || ||||| ||
Sbjct 1359 TTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCCTTTTAATATC 1418
Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222
|| || ||||| | ||||| |||||||| || ||||| |||||||| ||||| ||
Sbjct 1419 GCATCATACGCTCTATTGACGTACATGATTGCTCATGTTACAAATTTAAAGCCTGGCGAT 1478
Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282
|||||||| || || || |||| |||||||||| |||||||| ||||| | | |||
Sbjct 1479 TTTGTTCATACTTTTGGTGATGCTCATATTTACACGAATCACATTGAGCCTCTCAAAGAG 1538
Query 41283 CAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAAC 41342
||||| ||| || ||| | ||||| ||| |||| || || || ||| ||
Sbjct 1539 CAACTCGAACGCAACCCTCGTCCATTCCCACAGCTAAAAATCAAGCGTCAAGTTCCTAAT 1598
Query 41343 ATTGATGATTTTTGCATCGATGATTTTGTCGT--TTGCGATTACAATCCGTACCCTAAAA 41400
|| ||||| ||| | || ||||| | || ||| || || |||| || || |
Sbjct 1599 ATCGATGACTTTAAGTTTGAAGATTTCGAAGTCATTG-GA-TATGATCCTTATCCACCCA 1656
Query 41401 TCCACATGGACATGTCTGTATGATAATTGATTA 41433
|| | ||||| ||| |||| | || ||| ||||
Sbjct 1657 TCAAAATGGAAATGGCTGTTTAATTATTAATTA 1689
>seq9081
Length=2203
Score = 190 bits (210), Expect = 2e-43
Identities = 492/735 (67%), Gaps = 26/735 (4%)
Strand=Plus/Minus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
|| || || || |||||||| ||||| || || ||||| || || || || ||
Sbjct 772 GTATTAGCATTCTTTGCTGCATCAGACGGCATTGTAAATGAGAACTTAATTGAACGATTC 713
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
|| ||||||||| || ||||||| |||| |||||||| || |||||||| || |||
Sbjct 712 AGTCAGGAAGTTCAAGTAACAGAAGCTCGATTCTTTTATGGATTCCAAATTGCTATGGAA 653
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG---GCA- 44025
||| | || || || |||||| |||| || || || || ||| |||| |||
Sbjct 652 AATGTACACTCAGAGATGTACTCGATTCTAATTGAAACTTATATCCGTGATGCAAAGCAG 593
Query 44026 CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAG-CA 44083
|| || | || || || ||||| || || || |||| |||| |||| | |||| ||
Sbjct 592 CGTGA--CTTC--TTATTCAATGCTATTGAGACTTTACCGTGCG--TAAAGAAAAAGGCA 539
Query 44084 GACTGGGCCCTTAAATGGATAAATTCA--AATGATTC---TTTTGGAGAACGACTTGTCG 44138
||||||||| | || ||||| || || || || | ||||| |||||| || | |
Sbjct 538 GACTGGGCCTTAAATTGGAT--ATCCAGTAAGCATGCAAACTTTGGTGAACGAGTTATTG 481
Query 44139 CGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAA 44198
| ||||| | ||| || || ||||||||| ||| ||||| || || |||||| | |
Sbjct 480 CCTTTGCTGCTGTCGAGGGGATTTTCTTTAGTGGAAGCTTTGCAGCAATCTTTTGGATTA 421
Query 44199 AGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258
|||| || || || ||||| || ||||| || |||||||| | || | || ||||
Sbjct 420 AGAAGCGTGGATTAATGCCAGGTTTGACATTCTCAAATGAACTTATTTCGAGAGACGAAG 361
Query 44259 GCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCAT 44318
| | ||| | || ||||| ||||| | | |||| | | | ||||| ||
Sbjct 360 GACTTCATCGTGACTTTGCATGCTTAATGTACAAACATCT--TATTC-AGAAGCCACCA- 305
Query 44319 GTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGAC 44376
|||| | || || ||| | |||||| |||||||| ||| | |||||| ||||
Sbjct 304 -AAAGAACGAGTTGTTGAAATTATCACAGAGGCTGTAAAGATTGAAAAGGAATTTTTGAC 246
Query 44377 AACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGA 44436
||| | || ||||| | | || |||||| ||| ||| |||| |||||
Sbjct 245 TGACGCACTTCCAGTAAAGATGTTGGGCATGAATTGTGATTTAATGTCTGAATACATTGA 186
Query 44437 ATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAA 44496
|| | | || |||| |||| | ||| |||| || || ||||| | ||||
Sbjct 185 ATTCGTAGCCGATCATTTATTAGGCGAATTGGGACTTGACAAGGTCTATAATACCAAAAA 126
Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556
|| || ||||||||| ||||| | || ||||| || ||||| |||||| |
Sbjct 125 TCCATTCTCATTTATGGAATTAATTTCACTTGAGGGCAAGACTAACTTCTTTGAACGAAA 66
Query 44557 CGTTGGAGAATATCA 44571
||||| ||||||||
Sbjct 65 GGTTGGCGAATATCA 51
>seq2126
Length=22511
Score = 159 bits (176), Expect = 3e-34
Identities = 270/390 (69%), Gaps = 6/390 (2%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|| ||||||||||||||||| ||||||| | || ||||| ||| | |||| ||||
Sbjct 17292 CCGAAAATTGTAAATGGTCCACAAATCTTGGACAAGTATGTTGGTGAGAGCGAAGCAAAT 17351
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
| || | | |||||||| || ||||||||| |||| | ||||| | || || |
Sbjct 17352 ATTCGTAGACTTTTTGCTGATGCAGAAGAAGAAGAAAAGAGATTAGGTCCAAACAGCGGT 17411
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---TGGT 19605
| |||||||| ||| | || ||| | || || || ||||| |||| || || |
Sbjct 17412 CTTCACATTATCATATTTGACGAAATCGATGCTATTTGTAAATCTCGAGGCTCAGTTGCT 17471
Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| |||| || || || || || ||||| |||||| | | | || | |||||||||
Sbjct 17472 GGAAATTCAGGCGTCCACGATACGGTTGTGAATCAATTATTAGCCAAGATCGACGGTGTT 17531
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| ||| | ||||| ||||| |||||||| ||||| ||| ||| || | || ||
Sbjct 17532 GAGCAATTAAATAACATTTTGGTTATTGGTATGACAAATCGACGTGACATGATTGATGAT 17591
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
|| ||| | |||| ||| | || || | | || |||||| ||| || ||||| |
Sbjct 17592 GCTTTAATGAGACCTGGTAGATTAGAGGTTCAAATGGAAATTGGCTTGCCTAATGAACCT 17651
Query 19783 GGACGTGTGGAAATTTTAAACATACATACA 19812
||||| || ||||||| || || ||||||
Sbjct 17652 GGACGAGTACAAATTTTGAATATTCATACA 17681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397312244760385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |