Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3947 241 1e-58 seq9081 190 2e-43 seq2126 159 3e-34 >seq3947 Length=2916 Score = 241 bits (266), Expect = 1e-58 Identities = 404/573 (71%), Gaps = 10/573 (2%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 |||||| | ||||| |||||||||||||| | ||| |||||||| || ||||| | || Sbjct 1122 GGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATAAGAC- 1180 Query 40926 ATGTACTC-TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG-A 40983 ||| || ||| ||| ||| ||||||| ||||||||| | ||||| || ||| | Sbjct 1181 ATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGA-ACGCA 1239 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 ||||||| |||| || ||||| || || || | || ||||| ||| ||| | | Sbjct 1240 TTAAATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCAGTGGATATTC 1299 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAA 41102 |||||| | ||||| ||||| |||| || |||||||| || ||||| || Sbjct 1300 CACAAATGGCACTTCCACCATGTCA-TTGTCTGGTACAGTTTTATGTCGCAAATGGCGAG 1358 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || || ||||| || |||||||||| ||| ||||| || || || || ||||| || Sbjct 1359 TTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCCTTTTAATATC 1418 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || || ||||| | ||||| |||||||| || ||||| |||||||| ||||| || Sbjct 1419 GCATCATACGCTCTATTGACGTACATGATTGCTCATGTTACAAATTTAAAGCCTGGCGAT 1478 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282 |||||||| || || || |||| |||||||||| |||||||| ||||| | | ||| Sbjct 1479 TTTGTTCATACTTTTGGTGATGCTCATATTTACACGAATCACATTGAGCCTCTCAAAGAG 1538 Query 41283 CAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAAC 41342 ||||| ||| || ||| | ||||| ||| |||| || || || ||| || Sbjct 1539 CAACTCGAACGCAACCCTCGTCCATTCCCACAGCTAAAAATCAAGCGTCAAGTTCCTAAT 1598 Query 41343 ATTGATGATTTTTGCATCGATGATTTTGTCGT--TTGCGATTACAATCCGTACCCTAAAA 41400 || ||||| ||| | || ||||| | || ||| || || |||| || || | Sbjct 1599 ATCGATGACTTTAAGTTTGAAGATTTCGAAGTCATTG-GA-TATGATCCTTATCCACCCA 1656 Query 41401 TCCACATGGACATGTCTGTATGATAATTGATTA 41433 || | ||||| ||| |||| | || ||| |||| Sbjct 1657 TCAAAATGGAAATGGCTGTTTAATTATTAATTA 1689 >seq9081 Length=2203 Score = 190 bits (210), Expect = 2e-43 Identities = 492/735 (67%), Gaps = 26/735 (4%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || || || || |||||||| ||||| || || ||||| || || || || || Sbjct 772 GTATTAGCATTCTTTGCTGCATCAGACGGCATTGTAAATGAGAACTTAATTGAACGATTC 713 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 || ||||||||| || ||||||| |||| |||||||| || |||||||| || ||| Sbjct 712 AGTCAGGAAGTTCAAGTAACAGAAGCTCGATTCTTTTATGGATTCCAAATTGCTATGGAA 653 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG---GCA- 44025 ||| | || || || |||||| |||| || || || || ||| |||| ||| Sbjct 652 AATGTACACTCAGAGATGTACTCGATTCTAATTGAAACTTATATCCGTGATGCAAAGCAG 593 Query 44026 CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAG-CA 44083 || || | || || || ||||| || || || |||| |||| |||| | |||| || Sbjct 592 CGTGA--CTTC--TTATTCAATGCTATTGAGACTTTACCGTGCG--TAAAGAAAAAGGCA 539 Query 44084 GACTGGGCCCTTAAATGGATAAATTCA--AATGATTC---TTTTGGAGAACGACTTGTCG 44138 ||||||||| | || ||||| || || || || | ||||| |||||| || | | Sbjct 538 GACTGGGCCTTAAATTGGAT--ATCCAGTAAGCATGCAAACTTTGGTGAACGAGTTATTG 481 Query 44139 CGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAA 44198 | ||||| | ||| || || ||||||||| ||| ||||| || || |||||| | | Sbjct 480 CCTTTGCTGCTGTCGAGGGGATTTTCTTTAGTGGAAGCTTTGCAGCAATCTTTTGGATTA 421 Query 44199 AGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258 |||| || || || ||||| || ||||| || |||||||| | || | || |||| Sbjct 420 AGAAGCGTGGATTAATGCCAGGTTTGACATTCTCAAATGAACTTATTTCGAGAGACGAAG 361 Query 44259 GCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCAT 44318 | | ||| | || ||||| ||||| | | |||| | | | ||||| || Sbjct 360 GACTTCATCGTGACTTTGCATGCTTAATGTACAAACATCT--TATTC-AGAAGCCACCA- 305 Query 44319 GTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGAC 44376 |||| | || || ||| | |||||| |||||||| ||| | |||||| |||| Sbjct 304 -AAAGAACGAGTTGTTGAAATTATCACAGAGGCTGTAAAGATTGAAAAGGAATTTTTGAC 246 Query 44377 AACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGA 44436 ||| | || ||||| | | || |||||| ||| ||| |||| ||||| Sbjct 245 TGACGCACTTCCAGTAAAGATGTTGGGCATGAATTGTGATTTAATGTCTGAATACATTGA 186 Query 44437 ATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAA 44496 || | | || |||| |||| | ||| |||| || || ||||| | |||| Sbjct 185 ATTCGTAGCCGATCATTTATTAGGCGAATTGGGACTTGACAAGGTCTATAATACCAAAAA 126 Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556 || || ||||||||| ||||| | || ||||| || ||||| |||||| | Sbjct 125 TCCATTCTCATTTATGGAATTAATTTCACTTGAGGGCAAGACTAACTTCTTTGAACGAAA 66 Query 44557 CGTTGGAGAATATCA 44571 ||||| |||||||| Sbjct 65 GGTTGGCGAATATCA 51 >seq2126 Length=22511 Score = 159 bits (176), Expect = 3e-34 Identities = 270/390 (69%), Gaps = 6/390 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||||||||||||||| ||||||| | || ||||| ||| | |||| |||| Sbjct 17292 CCGAAAATTGTAAATGGTCCACAAATCTTGGACAAGTATGTTGGTGAGAGCGAAGCAAAT 17351 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || | | |||||||| || ||||||||| |||| | ||||| | || || | Sbjct 17352 ATTCGTAGACTTTTTGCTGATGCAGAAGAAGAAGAAAAGAGATTAGGTCCAAACAGCGGT 17411 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---TGGT 19605 | |||||||| ||| | || ||| | || || || ||||| |||| || || | Sbjct 17412 CTTCACATTATCATATTTGACGAAATCGATGCTATTTGTAAATCTCGAGGCTCAGTTGCT 17471 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | |||| || || || || || ||||| |||||| | | | || | ||||||||| Sbjct 17472 GGAAATTCAGGCGTCCACGATACGGTTGTGAATCAATTATTAGCCAAGATCGACGGTGTT 17531 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||| | ||||| ||||| |||||||| ||||| ||| ||| || | || || Sbjct 17532 GAGCAATTAAATAACATTTTGGTTATTGGTATGACAAATCGACGTGACATGATTGATGAT 17591 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || ||| | |||| ||| | || || | | || |||||| ||| || ||||| | Sbjct 17592 GCTTTAATGAGACCTGGTAGATTAGAGGTTCAAATGGAAATTGGCTTGCCTAATGAACCT 17651 Query 19783 GGACGTGTGGAAATTTTAAACATACATACA 19812 ||||| || ||||||| || || |||||| Sbjct 17652 GGACGAGTACAAATTTTGAATATTCATACA 17681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397312244760385