Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5596 214 2e-50 seq3668 107 2e-18 seq8363 95.1 1e-14 >seq5596 Length=16775 Score = 214 bits (236), Expect = 2e-50 Identities = 944/1468 (64%), Gaps = 46/1468 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || |||||||| ||||| | || | || || | || |||||||| || Sbjct 11250 TTATCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCA 11309 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTGCACATTGTTTGGTAATTGGG 130524 ||||| ||||| | || ||||||| || || | || ||| | ||||| || Sbjct 11310 GTTTTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATT-TCCCATAATTTGG 11368 Query 130525 TTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582 || ||| || |||||| ||| ||||| |||||| |||||||| || | || || Sbjct 11369 TTCCGCTACATGAATAT--TGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCT 11426 Query 130583 GCCATGTCGAGCATG-GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAAT 130641 ||||| | || || || || || ||||| | || || || | | |||| Sbjct 11427 GCCATTT-GAATTTGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAAT 11485 Query 130642 GTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | | || || |||| | ||| | || || || | ||||||| || Sbjct 11486 ATCATCAGGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTT 11545 Query 130702 CATACTTTTATCGTACAATCCAAG--CTGTACAAGATCTTTTACCAAATGATTATTAATG 130759 ||| | ||| | || ||| | |||| ||| ||| || | | ||||| ||||| Sbjct 11546 CATGTCATCATCCCATAAACCACGTTCTGT-CAA-ATCCTTAATAAGATGATGATTAACA 11603 Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 | |||||| || ||| || || || | | |||| || || ||| |||||||||| Sbjct 11604 ACTTGAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAA 11663 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 || || || || || || || ||||| | ||| || ||||| ||| | ||| | Sbjct 11664 CTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAAT 11723 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAG 130939 |||||||||||||| || |||||||| || ||| | ||||||||||| | Sbjct 11724 GAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCA 11783 Query 130940 GTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGAT 130999 || ||| | || | |||||||||| |||||| ||| ||||| | |||| | Sbjct 11784 GTTGGTGTC---TTTTCCCACATATCATATTGTAATATACCTTTTGATACTGGACATCCT 11840 Query 131000 TCGAACGATTCGTAGATTCC---TTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCT 131056 || ||| || || |||| || || |||| || ||| | || |||||| Sbjct 11841 TCATACGTCTCATAAGTTCCAAGTTTTTCA---GCCAATTCACAGCTCGACTCTAAAGCT 11897 Query 131057 CCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAA 131116 || |||||||| || || ||||||| ||||||| ||| |||| | |||||| Sbjct 11898 CCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTAT 11957 Query 131117 GGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTA 131176 || | | |||| || ||||| || || || | || || || |||| || | || | | Sbjct 11958 GGCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGA 12017 Query 131177 TGTTTTAAATTACAT--TTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTATTT 131234 ||| | || || || || || ||| ||||| | |||| ||||| |||| Sbjct 12018 TGTCTAAAGTTTGATCGTTTAGCTTC--TTCAACTGGATAGAAATTAACTTCAATAATTT 12075 Query 131235 TGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAA--CGT 131292 | |||||||| | || || | |||||| |||||||| | ||||||| | | | Sbjct 12076 TATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATTCTT 12135 Query 131293 GCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGT 131352 | ||| | || ||||| ||||| ||||| || | |||||| || || Sbjct 12136 TACGATTTGGC--TTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAAC 12193 Query 131353 TTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCC 131412 ||| || | | |||| || |||||||| | || ||||| || || || || Sbjct 12194 TTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCC 12253 Query 131413 CAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGC 131471 | ||| |||||||| |||| ||| ||||| ||||| |||| ||| || || || | Sbjct 12254 AAGATTCTGTTGATTCGATTTACGATT-ACATGCATCCTTATACAGCATATAAGGTGTTC 12312 Query 131472 CCGTTTCGACTTGAGTTTCAATAAT-GTATCGAAAGAGTTTTCGAGCAGACAATTGATAT 131530 | || || ||||||| ||||||||| | | | | | || | || | |||| Sbjct 12313 CTGTCTCAACTTGAGATTCAATAATTGCAAACCATAAATCTT-GTGCCTTTACTTGACGA 12371 Query 131531 TTGTATTGGCCGCGTTTTTCGTAATTTTCG----TACAACGTTTCAAAGTTTTGGCCAAA 131586 | || | || | ||| || ||| || | ||||||| | || ||| | Sbjct 12372 ATAAATCGTCCTTCTGCTTCATA----TCGAATATATAGATTTTCAAATTCTTTACCATA 12427 Query 131587 CGAACTGTCCAAATTGGGACATTCGCTG-GGACACATTAGCGACCACACGCCGTTCTGTT 131645 | | | | ||||| | || |||||||||| ||||||| | || | || Sbjct 12428 AGTCTCATAAAGACCTGGACAG-CTATGAGGACACATTAAAGACCACATTTCATTGTTTT 12486 Query 131646 CAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTT 131705 |||| || | ||||||||| || || | |||||| || || |||| ||||||||| Sbjct 12487 CAACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAA 12546 Query 131706 TCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGG 131765 |||||| | || || |||| || |||| || ||| || |||| || ||||||| | Sbjct 12547 CTTCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAG 12606 Query 131766 GTTCCAAATACACTGCCATTGCGCCTTTGCG---CTTACCGCCTTGATTAACATGACGAA 131822 |||||||||| ||||| | ||| || || ||||| ||||||| ||||| ||| Sbjct 12607 GTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTG 12666 Query 131823 CCATGTTGTTGTATACGCGCAACATGGG 131850 | | || ||||| || | |||||| || Sbjct 12667 CTGTATTATTGTAAACTCTCAACATAGG 12694 >seq3668 Length=32275 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| || || || || ||||| ||||||||||| |||| | || | ||||| Sbjct 30882 ACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCC 30823 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| | || | ||| |||||||| || || | || ||||| || | Sbjct 30822 AATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 30763 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | |||| | |||||| | | |||||||| | ||| || | ||| Sbjct 30762 ATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTA 30703 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | ||||| || ||||||||||| Sbjct 30702 CCAGTTAATGTTTTGACGAAGATTTGCAT 30674 >seq8363 Length=52898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || || || | || || ||||| ||||||||||||||||||| |||| | Sbjct 26341 CGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCA 26400 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || | ||||||||||| | || | || |||||||| || || | || |||||| Sbjct 26401 TCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTA 26460 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || || || || | |||| | ||||| | |||| || ||||| || || || Sbjct 26461 TCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGC-TCGACTTCGAGGGTAAT 26519 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||||| ||||| || ||||| ||||| Sbjct 26520 TGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424780706140824