Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 140 4e-28
seq29385 104 3e-17
seq21622 89.7 6e-13
>seq5596
Length=16775
Score = 140 bits (154), Expect = 4e-28
Identities = 449/684 (66%), Gaps = 22/684 (3%)
Strand=Plus/Plus
Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777
||||||| |||||||| | ||||||||||| || || || || || || || |||||||
Sbjct 11647 TTGTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCA 11706
Query 110778 TTGGTGCCATCAAAAGACTG--TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835
||||||| | | || | || ||||||||||| | |||||| ||| || | |
Sbjct 11707 TTGGTGC--TAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGC 11764
Query 110836 ATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893
||||| | | | | || ||||| || ||||||||| ||| | || | | |||
Sbjct 11765 TTCCCAATCCCACAAGTCAG-TTGGTGTC-TTTTCCCACATATCATATTGTAATATACCT 11822
Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953
| || | ||| | || ||| | || ||||| | || | ||||||||||||||||
Sbjct 11823 TTTGATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAG 11882
Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013
|||| ||| | | | | | ||| || || ||||| || | ||| | || |||
Sbjct 11883 CTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCT 11942
Query 111014 TCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACC 111072
||||| || || ||| | | || ||| ||||| |||| || | ||||||| ||
Sbjct 11943 TCATCAGACTCGTATG-GCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCC 12001
Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGA--CTTTCGCGCAGTC-TCAACGGGATAAAA 111129
| || || || | |||| | || || ||| || || ||||| ||||| ||
Sbjct 12002 AATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGC---TTCTTCAACTGGATAGAA 12058
Query 111130 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTT 111189
||| ||||| | | |||| |||| | || || |||||||||| ||| | | |||
Sbjct 12059 ATTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTT 12118
Query 111190 TTCATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 111246
| ||||| | | ||| | | |||||| || | | ||| ||||||||
Sbjct 12119 ATGGAAATCATATTCTTTACGA---TTTGGCTTGACAAACATATTTAAGGCAATTGATGC 12175
Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306
||||| || ||||| ||||| ||| || || | | |||||| |||||||| ||
Sbjct 12176 TAAATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATT 12235
Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366
|| | || || || | ||||| ||| || || || || |||||||| ||
Sbjct 12236 TGAGCAACGGATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATCCTTATA 12295
Query 111367 GAGCATGTAGGGCGTCCCCGTCTC 111390
||||| || || || || |||||
Sbjct 12296 CAGCATATAAGGTGTTCCTGTCTC 12319
>seq29385
Length=2825
Score = 104 bits (114), Expect = 3e-17
Identities = 249/370 (67%), Gaps = 10/370 (3%)
Strand=Plus/Minus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|||||||| ||||| || | ||| || || | ||| | | ||| | |||||||| ||
Sbjct 1126 CGATCAAATCGACCAGGTCTAAGTAGTGCTTTATCTAAAACATCTGCACGATTAGTTGCA 1067
Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566
||||| | | | ||| ||||| |||||||||||||| || | || |||
Sbjct 1066 GCAATTATTATCACGCCT---TCATTAGATTCAAAGCCATCCATTTCAACTAATAGCTGA 1010
Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGCC 11625
|| | |||||| |||||||||||||| | | || |||| | || ||| | ||
Sbjct 1009 TTTAATGTTTGCTCTCTCTCATCATTACCACCACCTAA-ACCAATTCCACGATGCCTACC 951
Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685
|| ||||| || ||||| || || | || || || ||||| | |||||
Sbjct 950 TACAGCATCTATTTCATCTATAAAAATTATGCAAGGAGCATTTTTCTTACCTTGATCAAA 891
Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745
| ||| || || | | |||||||| ||||||||||| || ||||| | | | ||||
Sbjct 890 CATATCACGTACACGACTTGCACCCACCCCAACAAACATTTCAACAAAATCGGAGCCAGA 831
Query 11746 GC-ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804
||| | ||||||||||| | ||||| || || || || || || ||||| || |
Sbjct 830 AATACTAAAA-AATGGGACATTAGCCTCACCAGCAATTGCACGAGCAAGAAGGGTTTTAC 772
Query 11805 CCGTACCTGG 11814
| ||||| ||
Sbjct 771 CAGTACCAGG 762
>seq21622
Length=7187
Score = 89.7 bits (98), Expect = 6e-13
Identities = 226/338 (67%), Gaps = 12/338 (4%)
Strand=Plus/Minus
Query 11402 AAAATCTTCTTGCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGC-GATCAAAACG 11460
||||| | || ||||| || | | ||| | |||||| || ||||| |||| || ||
Sbjct 3550 AAAATTTGCTCACGACCCCGAATATCTGGTAAACCCACAACGA-CTTGCCGATCGAAGCG 3492
Query 11461 ACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCAC 11520
|| ||||| || | ||| |||||| | ||| || || ||||| ||||| || |
Sbjct 3491 CCCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCAGCAATCACAAT 3432
Query 11521 AATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTG 11577
||||| || || || ||||| |||||||| || | | || || | ||| ||
Sbjct 3431 AATGC---TCCCAGTGCCTTCAAACCCATCCATTTCCACCAACATCTGGTTCAATGTCTG 3375
Query 11578 TTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAAT 11637
|| | ||||||| | | |||||||| ||||| || |||||||||||
Sbjct 3374 CTCACGTTCATCATGACCACCCCCTAAACCAGCACCTCGTTGACGCCCAACCGCATCAAT 3315
Query 11638 CTCATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGATTTCAAAGAGATCGCGA 11695
|||||| || || | ||| || ||| | |||| | || ||||| | ||| ||
Sbjct 3314 CTCATCGATAAAAATAATGCAGGGTGCCGCTTTTTTAGCCTGA--TCAAACATATCCCGC 3257
Query 11696 ACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733
|||| | |||||| || || |||||||| || |||||
Sbjct 3256 ACCCGTGAGGCACCAACGCCGACAAACATTTCAACAAA 3219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627799023679200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |