Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5596 140 4e-28 seq29385 104 3e-17 seq21622 89.7 6e-13 >seq5596 Length=16775 Score = 140 bits (154), Expect = 4e-28 Identities = 449/684 (66%), Gaps = 22/684 (3%) Strand=Plus/Plus Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 ||||||| |||||||| | ||||||||||| || || || || || || || ||||||| Sbjct 11647 TTGTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCA 11706 Query 110778 TTGGTGCCATCAAAAGACTG--TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||||||| | | || | || ||||||||||| | |||||| ||| || | | Sbjct 11707 TTGGTGC--TAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGC 11764 Query 110836 ATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 ||||| | | | | || ||||| || ||||||||| ||| | || | | ||| Sbjct 11765 TTCCCAATCCCACAAGTCAG-TTGGTGTC-TTTTCCCACATATCATATTGTAATATACCT 11822 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 | || | ||| | || ||| | || ||||| | || | |||||||||||||||| Sbjct 11823 TTTGATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAG 11882 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 |||| ||| | | | | | ||| || || ||||| || | ||| | || ||| Sbjct 11883 CTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCT 11942 Query 111014 TCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACC 111072 ||||| || || ||| | | || ||| ||||| |||| || | ||||||| || Sbjct 11943 TCATCAGACTCGTATG-GCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCC 12001 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGA--CTTTCGCGCAGTC-TCAACGGGATAAAA 111129 | || || || | |||| | || || ||| || || ||||| ||||| || Sbjct 12002 AATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGC---TTCTTCAACTGGATAGAA 12058 Query 111130 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTT 111189 ||| ||||| | | |||| |||| | || || |||||||||| ||| | | ||| Sbjct 12059 ATTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTT 12118 Query 111190 TTCATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 111246 | ||||| | | ||| | | |||||| || | | ||| |||||||| Sbjct 12119 ATGGAAATCATATTCTTTACGA---TTTGGCTTGACAAACATATTTAAGGCAATTGATGC 12175 Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306 ||||| || ||||| ||||| ||| || || | | |||||| |||||||| || Sbjct 12176 TAAATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATT 12235 Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366 || | || || || | ||||| ||| || || || || |||||||| || Sbjct 12236 TGAGCAACGGATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATCCTTATA 12295 Query 111367 GAGCATGTAGGGCGTCCCCGTCTC 111390 ||||| || || || || ||||| Sbjct 12296 CAGCATATAAGGTGTTCCTGTCTC 12319 >seq29385 Length=2825 Score = 104 bits (114), Expect = 3e-17 Identities = 249/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| ||||| || | ||| || || | ||| | | ||| | |||||||| || Sbjct 1126 CGATCAAATCGACCAGGTCTAAGTAGTGCTTTATCTAAAACATCTGCACGATTAGTTGCA 1067 Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 ||||| | | | ||| ||||| |||||||||||||| || | || ||| Sbjct 1066 GCAATTATTATCACGCCT---TCATTAGATTCAAAGCCATCCATTTCAACTAATAGCTGA 1010 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGCC 11625 || | |||||| |||||||||||||| | | || |||| | || ||| | || Sbjct 1009 TTTAATGTTTGCTCTCTCTCATCATTACCACCACCTAA-ACCAATTCCACGATGCCTACC 951 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 || ||||| || ||||| || || | || || || ||||| | ||||| Sbjct 950 TACAGCATCTATTTCATCTATAAAAATTATGCAAGGAGCATTTTTCTTACCTTGATCAAA 891 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 | ||| || || | | |||||||| ||||||||||| || ||||| | | | |||| Sbjct 890 CATATCACGTACACGACTTGCACCCACCCCAACAAACATTTCAACAAAATCGGAGCCAGA 831 Query 11746 GC-ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||||||||||| | ||||| || || || || || || ||||| || | Sbjct 830 AATACTAAAA-AATGGGACATTAGCCTCACCAGCAATTGCACGAGCAAGAAGGGTTTTAC 772 Query 11805 CCGTACCTGG 11814 | ||||| || Sbjct 771 CAGTACCAGG 762 >seq21622 Length=7187 Score = 89.7 bits (98), Expect = 6e-13 Identities = 226/338 (67%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 11402 AAAATCTTCTTGCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGC-GATCAAAACG 11460 ||||| | || ||||| || | | ||| | |||||| || ||||| |||| || || Sbjct 3550 AAAATTTGCTCACGACCCCGAATATCTGGTAAACCCACAACGA-CTTGCCGATCGAAGCG 3492 Query 11461 ACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCAC 11520 || ||||| || | ||| |||||| | ||| || || ||||| ||||| || | Sbjct 3491 CCCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCAGCAATCACAAT 3432 Query 11521 AATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTG 11577 ||||| || || || ||||| |||||||| || | | || || | ||| || Sbjct 3431 AATGC---TCCCAGTGCCTTCAAACCCATCCATTTCCACCAACATCTGGTTCAATGTCTG 3375 Query 11578 TTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAAT 11637 || | ||||||| | | |||||||| ||||| || ||||||||||| Sbjct 3374 CTCACGTTCATCATGACCACCCCCTAAACCAGCACCTCGTTGACGCCCAACCGCATCAAT 3315 Query 11638 CTCATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGATTTCAAAGAGATCGCGA 11695 |||||| || || | ||| || ||| | |||| | || ||||| | ||| || Sbjct 3314 CTCATCGATAAAAATAATGCAGGGTGCCGCTTTTTTAGCCTGA--TCAAACATATCCCGC 3257 Query 11696 ACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 |||| | |||||| || || |||||||| || ||||| Sbjct 3256 ACCCGTGAGGCACCAACGCCGACAAACATTTCAACAAA 3219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627799023679200