Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 138 1e-27
seq29385 105 8e-18
seq21622 84.2 3e-11
>seq5596
Length=16775
Score = 138 bits (152), Expect = 1e-27
Identities = 449/687 (65%), Gaps = 14/687 (2%)
Strand=Plus/Minus
Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965
|||||| ||||| || ||||| || ||||| || || || || ||||| | ||
Sbjct 12328 TCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGGATGCATGTAATCGTAAATCG 12269
Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025
|||||| ||||| | || ||| | || ||| | ||||| ||||| | ||| |
Sbjct 12268 AATCAACAGAATCTTGGAACAATCCGTTGCTCAAATTTATGTACTGAAATTGTCCAATAT 12209
Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085
|| |||||||| ||||| ||||| | |||||||| || | | || |||
Sbjct 12208 TCAAGTAAAGATGAAGTTGCTGTCTGTAATTTAGCATCAATTGCCTTAAATATGTTTGTC 12149
Query 105086 GATCCAGAGAC-AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 105144
| ||| | ||||| || ||||| | ||| | | ||||| || || | |||||
Sbjct 12148 AAGCCAAATCGTAAAGA-ATATGATTTCCATAAATTGAAGGAAGTCACAAAGATAGTCAC 12090
Query 105145 CAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATC 105204
| ||| |||| | | ||||||| ||||| || || ||||| ||| |||
Sbjct 12089 AAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCAGTTGAAGAAGCTAAACGATC 12030
Query 105205 TAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264
|| | ||||| |||||||| || | || |||| || | || |||| || || |
Sbjct 12029 AAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGATTAGCTGATGCCTTTATA-T 11971
Query 105265 TTGTCGCCACGC-ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323
| | | || || || || || ||||| || | | ||| | ||||||||||
Sbjct 11970 TGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTAAATCAACAAATATTTGAGA 11911
Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATG 105383
| || ||| | | ||| | ||| |||| | || ||||| || ||| | ||||
Sbjct 11910 CAATTTATTATGGAGCTTTAGAGTCGAGCTGTGAATTGGCTGAAAAACTTGGAACTTATG 11851
Query 105384 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 105443
| || | ||| || | ||||| ||| |||| | | |||| ||||||||||||| |
Sbjct 11850 AGACGTATGAAGGATGTCCAGTATCAAAAGGTATATTACAATATGATATGTGGGAAAA-G 11792
Query 105444 AGACCAAGCTTCACTAC---GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTC 105500
| ||||| | ||| || |||||||| | || ||| |||||| | ||||
Sbjct 11791 ACACCAAC--TGACTTGTGGGATTGGGAAGCATTAAAAGAAAAAATCAAGAATTTTGGTC 11734
Query 105501 TTCGTAA--CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 105558
||||||| || | | | | || ||||||||||| || || || || || || || ||
Sbjct 11733 TTCGTAATTCATTGTTATTA--GCACCAATGCCAACTGCATCAACAGCTCAGATTTTAGG 11676
Query 105559 TAATAATGAATGCTTTGAACCCTACAC 105585
||||||||| | |||||||| |||||
Sbjct 11675 TAATAATGAGAGTTTTGAACCGTACAC 11649
>seq29385
Length=2825
Score = 105 bits (116), Expect = 8e-18
Identities = 325/496 (66%), Gaps = 14/496 (3%)
Strand=Plus/Minus
Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582
||||||||| ||||| || | ||| || || | ||| | | ||| | ||||| || ||
Sbjct 1127 ACGATCAAATCGACCAGGTCTAAGTAGTGCTTTATCTAAAACATCTGCACGATTAGTTGC 1068
Query 9583 GGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTG 9639
|| || | | | ||| |||||| ||||| |||||||| || || || ||
Sbjct 1067 AGCAATTATTATCACGCCT---TCATTAGATTCAAAGCCATCCATTTCAACTAATAGCTG 1011
Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTC 9698
|| | ||||| || | |||||||| | | || |||| | || ||| | |
Sbjct 1010 ATTTAATGTTTGCTCTCTCTCATCATTACCACCACCTAA-ACCAATTCCACGATGCCTAC 952
Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758
| || ||||| || ||||| || || | ||||| || ||||| | | ||||
Sbjct 951 CTACAGCATCTATTTCATCTATAAAAATTATGCAAGGAGCATTTTTCTTACCTTGATCAA 892
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818
| | ||| |||||||| | || ||||| ||||||||||| || ||||| | | | | |
Sbjct 891 ACATATCACGTACACGACTTGCACCCACCCCAACAAACATTTCAACAAAATCGGAGCCAG 832
Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878
|| | || |||||||||| ||||| ||||| || || || ||||| || ||||
Sbjct 831 AAATACTAAAAAATGGGACATTAGCCTCACCAGCAATTGCACGAGCAAGAAGGGTTTTAC 772
Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACT--TCCAA 9935
| ||||| || || | ||| ||| || || || | || | | | ||
Sbjct 771 CAGTACCAGGAGAGCCAATTAAAAGGCAGCCTTTAGGTATTTTTCCTCCTAATGCTTGAA 712
Query 9936 AGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGT 9995
| | | | | || ||||||||||| ||||||||| ||||||| ||||| || | |
Sbjct 711 ATTTTTGCCTA---TGTTTAAGAAAATCAACAATTTCTACCAATTCTTCTTTTGCTTCAT 655
Query 9996 CAATCCCCTCAACATC 10011
| || || |||||||
Sbjct 654 CTATACCGGCAACATC 639
>seq21622
Length=7187
Score = 84.2 bits (92), Expect = 3e-11
Identities = 271/417 (65%), Gaps = 8/417 (2%)
Strand=Plus/Minus
Query 9476 AAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGA 9535
|| || | ||| || ||||||| | ||| | | | || || | ||||| |||||
Sbjct 3550 AAAATTTGCTCACGACCCCGAATATCTGGTAAACCCACAACGACTTGCCGATCGAAGCGC 3491
Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595
||||| || || | ||| |||||| | ||| || || || || || || |||| |
Sbjct 3490 CCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCAGCAATCACAATA 3431
Query 9596 ATAC--CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTT 9653
|| | | | | || |||| |||||||| || ||| | ||||| | || || |
Sbjct 3430 ATGCTCCCAGTGCCTT--CAAACCCATCCATTTCCACCAACATCTGGTTCAATGTCTGCT 3373
Query 9654 CCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9713
| |||||||||| | | |||||||| ||||| || || ||||||||||
Sbjct 3372 CACGTTCATCATGACCACCCCCTAAACCAGCACCTCGTTGACGCCCAACCGCATCAATCT 3313
Query 9714 CATCAATGAAGACGATGCATGGT--TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC 9771
|||| || || | ||||| ||| | |||| ||| ||||| | |||||| ||
Sbjct 3312 CATCGATAAAAATAATGCAGGGTGCCGCTTTT--TTAGCCTGATCAAACATATCCCGCAC 3255
Query 9772 ACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAA 9831
|| ||| || || || |||||||| || ||||| | | | ||||| | ||
Sbjct 3254 CCGTGAGGCACCAACGCCGACAAACATTTCAACAAAATCAGAGCCGGAAATGCTAAAAAA 3195
Query 9832 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|| || || | ||||| || || ||| || || || |||||||| || || ||
Sbjct 3194 AGGCACCTTGGCCTCACCAGCTATCGCTTTAGCCAGTAGGGTCTTACCGGTGCCGGG 3138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583044432115480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |