Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5596 138 1e-27 seq29385 105 8e-18 seq21622 84.2 3e-11 >seq5596 Length=16775 Score = 138 bits (152), Expect = 1e-27 Identities = 449/687 (65%), Gaps = 14/687 (2%) Strand=Plus/Minus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 |||||| ||||| || ||||| || ||||| || || || || ||||| | || Sbjct 12328 TCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGGATGCATGTAATCGTAAATCG 12269 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 |||||| ||||| | || ||| | || ||| | ||||| ||||| | ||| | Sbjct 12268 AATCAACAGAATCTTGGAACAATCCGTTGCTCAAATTTATGTACTGAAATTGTCCAATAT 12209 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 || |||||||| ||||| ||||| | |||||||| || | | || ||| Sbjct 12208 TCAAGTAAAGATGAAGTTGCTGTCTGTAATTTAGCATCAATTGCCTTAAATATGTTTGTC 12149 Query 105086 GATCCAGAGAC-AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 105144 | ||| | ||||| || ||||| | ||| | | ||||| || || | ||||| Sbjct 12148 AAGCCAAATCGTAAAGA-ATATGATTTCCATAAATTGAAGGAAGTCACAAAGATAGTCAC 12090 Query 105145 CAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATC 105204 | ||| |||| | | ||||||| ||||| || || ||||| ||| ||| Sbjct 12089 AAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCAGTTGAAGAAGCTAAACGATC 12030 Query 105205 TAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 || | ||||| |||||||| || | || |||| || | || |||| || || | Sbjct 12029 AAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGATTAGCTGATGCCTTTATA-T 11971 Query 105265 TTGTCGCCACGC-ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 | | | || || || || || ||||| || | | ||| | |||||||||| Sbjct 11970 TGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTAAATCAACAAATATTTGAGA 11911 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATG 105383 | || ||| | | ||| | ||| |||| | || ||||| || ||| | |||| Sbjct 11910 CAATTTATTATGGAGCTTTAGAGTCGAGCTGTGAATTGGCTGAAAAACTTGGAACTTATG 11851 Query 105384 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 105443 | || | ||| || | ||||| ||| |||| | | |||| ||||||||||||| | Sbjct 11850 AGACGTATGAAGGATGTCCAGTATCAAAAGGTATATTACAATATGATATGTGGGAAAA-G 11792 Query 105444 AGACCAAGCTTCACTAC---GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTC 105500 | ||||| | ||| || |||||||| | || ||| |||||| | |||| Sbjct 11791 ACACCAAC--TGACTTGTGGGATTGGGAAGCATTAAAAGAAAAAATCAAGAATTTTGGTC 11734 Query 105501 TTCGTAA--CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 105558 ||||||| || | | | | || ||||||||||| || || || || || || || || Sbjct 11733 TTCGTAATTCATTGTTATTA--GCACCAATGCCAACTGCATCAACAGCTCAGATTTTAGG 11676 Query 105559 TAATAATGAATGCTTTGAACCCTACAC 105585 ||||||||| | |||||||| ||||| Sbjct 11675 TAATAATGAGAGTTTTGAACCGTACAC 11649 >seq29385 Length=2825 Score = 105 bits (116), Expect = 8e-18 Identities = 325/496 (66%), Gaps = 14/496 (3%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| ||||| || | ||| || || | ||| | | ||| | ||||| || || Sbjct 1127 ACGATCAAATCGACCAGGTCTAAGTAGTGCTTTATCTAAAACATCTGCACGATTAGTTGC 1068 Query 9583 GGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || | | | ||| |||||| ||||| |||||||| || || || || Sbjct 1067 AGCAATTATTATCACGCCT---TCATTAGATTCAAAGCCATCCATTTCAACTAATAGCTG 1011 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTC 9698 || | ||||| || | |||||||| | | || |||| | || ||| | | Sbjct 1010 ATTTAATGTTTGCTCTCTCTCATCATTACCACCACCTAA-ACCAATTCCACGATGCCTAC 952 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758 | || ||||| || ||||| || || | ||||| || ||||| | | |||| Sbjct 951 CTACAGCATCTATTTCATCTATAAAAATTATGCAAGGAGCATTTTTCTTACCTTGATCAA 892 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | | ||| |||||||| | || ||||| ||||||||||| || ||||| | | | | | Sbjct 891 ACATATCACGTACACGACTTGCACCCACCCCAACAAACATTTCAACAAAATCGGAGCCAG 832 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 || | || |||||||||| ||||| ||||| || || || ||||| || |||| Sbjct 831 AAATACTAAAAAATGGGACATTAGCCTCACCAGCAATTGCACGAGCAAGAAGGGTTTTAC 772 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACT--TCCAA 9935 | ||||| || || | ||| ||| || || || | || | | | || Sbjct 771 CAGTACCAGGAGAGCCAATTAAAAGGCAGCCTTTAGGTATTTTTCCTCCTAATGCTTGAA 712 Query 9936 AGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGT 9995 | | | | | || ||||||||||| ||||||||| ||||||| ||||| || | | Sbjct 711 ATTTTTGCCTA---TGTTTAAGAAAATCAACAATTTCTACCAATTCTTCTTTTGCTTCAT 655 Query 9996 CAATCCCCTCAACATC 10011 | || || ||||||| Sbjct 654 CTATACCGGCAACATC 639 >seq21622 Length=7187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 271/417 (65%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 9476 AAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGA 9535 || || | ||| || ||||||| | ||| | | | || || | ||||| ||||| Sbjct 3550 AAAATTTGCTCACGACCCCGAATATCTGGTAAACCCACAACGACTTGCCGATCGAAGCGC 3491 Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 ||||| || || | ||| |||||| | ||| || || || || || || |||| | Sbjct 3490 CCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCAGCAATCACAATA 3431 Query 9596 ATAC--CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTT 9653 || | | | | || |||| |||||||| || ||| | ||||| | || || | Sbjct 3430 ATGCTCCCAGTGCCTT--CAAACCCATCCATTTCCACCAACATCTGGTTCAATGTCTGCT 3373 Query 9654 CCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9713 | |||||||||| | | |||||||| ||||| || || |||||||||| Sbjct 3372 CACGTTCATCATGACCACCCCCTAAACCAGCACCTCGTTGACGCCCAACCGCATCAATCT 3313 Query 9714 CATCAATGAAGACGATGCATGGT--TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC 9771 |||| || || | ||||| ||| | |||| ||| ||||| | |||||| || Sbjct 3312 CATCGATAAAAATAATGCAGGGTGCCGCTTTT--TTAGCCTGATCAAACATATCCCGCAC 3255 Query 9772 ACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAA 9831 || ||| || || || |||||||| || ||||| | | | ||||| | || Sbjct 3254 CCGTGAGGCACCAACGCCGACAAACATTTCAACAAAATCAGAGCCGGAAATGCTAAAAAA 3195 Query 9832 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || || | ||||| || || ||| || || || |||||||| || || || Sbjct 3194 AGGCACCTTGGCCTCACCAGCTATCGCTTTAGCCAGTAGGGTCTTACCGGTGCCGGG 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583044432115480