Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq8700 125 8e-24
>seq8700
Length=5779
Score = 125 bits (138), Expect = 8e-24
Identities = 264/387 (68%), Gaps = 9/387 (2%)
Strand=Plus/Plus
Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002
|||||| || | ||| | |||||||| || ||||| |||||||| ||||| |||
Sbjct 387 AAACTCTCGAACACTGCGAGTCTCTCCTGTAGCAATTACAAAGTCTTCTGGTTTATCCTG 446
Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062
|| | ||| | |||||| || || ||||| |||| || |||||||| || || || |
Sbjct 447 CTGTAACATCATCCACATAGCTTCTACGTAGTCCTTAGCATGACCCCAATCACGTTTTGA 506
Query 159063 ATCCATGTTCCCGAGCTCGATGACTT-TTCCAGACTTTTTCCACTC--AGCCAGACCGAG 159119
||| | || || || || | || || || || || | | | ||| ||| ||
Sbjct 507 ATCAAGATTACCAAGTTCCAAGAATTCTTGTTGATTTAATGAAATTTTAGC--GACTGAT 564
Query 159120 C--GTGATCTTGCGCGTCAC-AAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAG 159176
| ||||| || || ||||| ||| ||| | || | | | ||| ||||| ||||| |
Sbjct 565 CTGGTGATTTTTCGTGTCACGAAATTCT-CACCTCTTCTTGGCGATTCATGATTAAATAA 623
Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236
||| || |||| || ||| |||| || |||||||| || | |||||||| ||
Sbjct 624 AATACCATTACATGCATACATACCGTAGGCTTCACGGTAATTAATAATGATCCAGTAGCC 683
Query 159237 AAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAAT 159296
| | | || | || | |||||||| | ||||||||||||||| ||| |||||
Sbjct 684 ATACAATTTAGCAACTGCATATGGACTTCTTGGATAAAATGGTGTCTTTTCAGTTTGAGG 743
Query 159297 TGGTTCCTGAACCTTTCCAAACATTTC 159323
| |||| ||| |||||| ||| |||
Sbjct 744 AGTTTCCACAACTTTTCCATACAATTC 770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547013003384600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |