Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8700 125 8e-24 >seq8700 Length=5779 Score = 125 bits (138), Expect = 8e-24 Identities = 264/387 (68%), Gaps = 9/387 (2%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 |||||| || | ||| | |||||||| || ||||| |||||||| ||||| ||| Sbjct 387 AAACTCTCGAACACTGCGAGTCTCTCCTGTAGCAATTACAAAGTCTTCTGGTTTATCCTG 446 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || | ||| | |||||| || || ||||| |||| || |||||||| || || || | Sbjct 447 CTGTAACATCATCCACATAGCTTCTACGTAGTCCTTAGCATGACCCCAATCACGTTTTGA 506 Query 159063 ATCCATGTTCCCGAGCTCGATGACTT-TTCCAGACTTTTTCCACTC--AGCCAGACCGAG 159119 ||| | || || || || | || || || || || | | | ||| ||| || Sbjct 507 ATCAAGATTACCAAGTTCCAAGAATTCTTGTTGATTTAATGAAATTTTAGC--GACTGAT 564 Query 159120 C--GTGATCTTGCGCGTCAC-AAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAG 159176 | ||||| || || ||||| ||| ||| | || | | | ||| ||||| ||||| | Sbjct 565 CTGGTGATTTTTCGTGTCACGAAATTCT-CACCTCTTCTTGGCGATTCATGATTAAATAA 623 Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236 ||| || |||| || ||| |||| || |||||||| || | |||||||| || Sbjct 624 AATACCATTACATGCATACATACCGTAGGCTTCACGGTAATTAATAATGATCCAGTAGCC 683 Query 159237 AAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAAT 159296 | | | || | || | |||||||| | ||||||||||||||| ||| ||||| Sbjct 684 ATACAATTTAGCAACTGCATATGGACTTCTTGGATAAAATGGTGTCTTTTCAGTTTGAGG 743 Query 159297 TGGTTCCTGAACCTTTCCAAACATTTC 159323 | |||| ||| |||||| ||| ||| Sbjct 744 AGTTTCCACAACTTTTCCATACAATTC 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547013003384600