Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8363 102 5e-17 >seq8363 Length=52898 Score = 102 bits (112), Expect = 5e-17 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| |||||||| || || || || ||| || ||||| || || || Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | || || | ||||||||||||||| || || || ||||| || || || Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCC 34656 | ||| || || ||| ||| ||| | ||||| | ||| ||||| || | ||| Sbjct 26449 ATTCCTTCTTTATCT-TGAATTTTAGCCTTAACATTTTCAATCGTGTC--CGATGGCTCG 26505 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTA 34716 ||||| | ||| || || ||||| || || ||||| || || ||||||||| ||| | || Sbjct 26506 ACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATGGTGAATCTA 26565 Query 34717 T 34717 | Sbjct 26566 T 26566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314615765942741