Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 131 1e-25
seq8363 125 6e-24
seq5242 114 1e-20
>seq3668
Length=32275
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || ||||| | || || || | || ||| | ||||| || || ||
Sbjct 30674 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTCT 30733
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| ||| || |||||||||||||| || ||||| ||||||
Sbjct 30734 GACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 30793
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| |||||||| | ||| || |||||||||||||| | || | || |||||
Sbjct 30794 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTACAAT 30853
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || || || ||||||||| | ||| | || ||||| ||
Sbjct 30854 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGTGGTAT 30903
>seq8363
Length=52898
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||| || || ||||| |||| || ||| | ||||| || ||||| || || |
Sbjct 26557 CCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCAT 26498
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| ||| ||||||| | || || ||||||||||| |||||||| || || || ||||
Sbjct 26497 CGGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATC 26438
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
|||| || || || | ||||| |||||||| || || | || | ||| ||||
Sbjct 26437 AACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACA 26378
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
| ||||| || ||||| || | || || || ||||| | || |||||
Sbjct 26377 ATATTCAGAAAGAGTCAACACTTCACTTAGTGTTGCGCCTTCGAGGTGG 26329
>seq5242
Length=62730
Score = 114 bits (126), Expect = 1e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565
||||||||||||||||||||| |||| |||||||||||||||||||| || |||||| |
Sbjct 10489 GAAGGCAAAATGCACGGATTTTTGCGAATGTATTGGGCAAAAAAGATTTTAGAATGGACG 10430
Query 135566 GCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGAT 135625
|||||||| | ||| | || || ||||| | ||| |||||| | | | | |||
Sbjct 10429 GCATCGCCAGAAGAAGGTCTTGAAACAGCAATTTATTTAAATGATCGTTTTAATCTTGAT 10370
Query 135626 GGACGCGATTCAAATGGCTACGTAGGTTGTATGTGG 135661
||| | ||| |||| || | || || || ||||||
Sbjct 10369 GGAAGAGATCCAAACGGGTTTGTTGGCTGCATGTGG 10334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434757061583040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |