Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3668 131 1e-25 seq8363 125 6e-24 seq5242 114 1e-20 >seq3668 Length=32275 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| | || || || | || ||| | ||||| || || || Sbjct 30674 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTCT 30733 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || |||||||||||||| || ||||| |||||| Sbjct 30734 GACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 30793 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||| || |||||||||||||| | || | || ||||| Sbjct 30794 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTACAAT 30853 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || ||||||||| | ||| | || ||||| || Sbjct 30854 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGTGGTAT 30903 >seq8363 Length=52898 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| |||| || ||| | ||||| || ||||| || || | Sbjct 26557 CCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCAT 26498 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| ||||||| | || || ||||||||||| |||||||| || || || |||| Sbjct 26497 CGGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATC 26438 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| || || || | ||||| |||||||| || || | || | ||| |||| Sbjct 26437 AACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACA 26378 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 | ||||| || ||||| || | || || || ||||| | || ||||| Sbjct 26377 ATATTCAGAAAGAGTCAACACTTCACTTAGTGTTGCGCCTTCGAGGTGG 26329 >seq5242 Length=62730 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 ||||||||||||||||||||| |||| |||||||||||||||||||| || |||||| | Sbjct 10489 GAAGGCAAAATGCACGGATTTTTGCGAATGTATTGGGCAAAAAAGATTTTAGAATGGACG 10430 Query 135566 GCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGAT 135625 |||||||| | ||| | || || ||||| | ||| |||||| | | | | ||| Sbjct 10429 GCATCGCCAGAAGAAGGTCTTGAAACAGCAATTTATTTAAATGATCGTTTTAATCTTGAT 10370 Query 135626 GGACGCGATTCAAATGGCTACGTAGGTTGTATGTGG 135661 ||| | ||| |||| || | || || || |||||| Sbjct 10369 GGAAGAGATCCAAACGGGTTTGTTGGCTGCATGTGG 10334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434757061583040