Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq7918 91.5 2e-13 >seq7918 Length=32631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 260/396 (66%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 137514 TGAACACCATAATCTAAATGACGAATACGGTTTTCTTCAATACCTTTATTATTTTTAAGA 137573 || || |||||||| | ||| || | || ||||| |||| || ||| ||||| | Sbjct 18048 TGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAAC 18107 Query 137574 ACTAACAATTTTTCTAATTCAAGGTGCCACATTGGGTAATATAAAGTAGCAGAACCACCT 137633 ||||||| ||||| ||| | ||||| | || || | | ||||| | || || Sbjct 18108 ACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCG 18167 Query 137634 CGAATCCCACCTTGGGAACATGATTTTACAGATGCC---AAATGGGTTTTCCAAAATGGA 137690 || | || |||||||| || ||||| || | || ||||| ||| |||| ||| Sbjct 18168 CGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATG---TTTGTAAAAAGGA 18224 Query 137691 ATGACA-CCGGTATGGACAACTTCGCCAAATCCTATTTTAGACCCTTCAGCCCTATACAT 137749 || ||| |||||||| | | || || | || ||| || | | | Sbjct 18225 AT-ACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTT 18283 Query 137750 ACCGGCATTAATACCAATACCAGCTCTTTTAGAAATGTATTTTACAATAGCTGCATTTGT 137809 ||||||||||| |||||||| || | || ||| | |||||| ||||| || || Sbjct 18284 GCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCGGT 18343 Query 137810 TTCATTAATAGAATCTAAAGAATCACCGCTATCAATAACTACGCAAGAACTAAATTGACG 137869 |||| || || |||||| ||| | | || || | || ||||| ||||||||||| Sbjct 18344 GGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACG 18403 Query 137870 TGTTGGGGTTCTTACACCAGACAAAATTGGTGTTGG 137905 |||||||| | ||||| | || ||| || || || Sbjct 18404 GGTTGGGGTACGAACACCCGCCATAATCGGAGTAGG 18439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518044553581080