Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq7918 114 2e-20 >seq7918 Length=32631 Score = 114 bits (126), Expect = 2e-20 Identities = 273/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTT---CTCAAGCTGTG 18364 |||| || || |||||||| || ||||| ||||||||||| || || ||| | |||| Sbjct 18441 TGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGCTCTTG-TGTG 18383 Query 18365 TTAAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAA 18424 |||| | || | || || | || || || || | | ||| || | || | Sbjct 18382 TTAA--TCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCGCCAGTGCCATTGTGA 18325 Query 18425 ATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAA 18484 | || | | |||| || ||||| || ||||| || || || || || ||| | Sbjct 18324 AATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCCTTAGGCA 18265 Query 18485 GTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCC 18544 | | ||||| ||||| | | || || || |||||| || | |||||||||| Sbjct 18264 GCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTACAAACATTTCC 18205 Query 18545 AGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATT 18604 | || || || |||||||| || ||||||||||| || || || || || || || | | Sbjct 18204 AAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTACCCTCTTCT 18145 Query 18605 ATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTG 18664 |||| | ||||||| ||| | ||| ||| | || | ||||| || || |||| Sbjct 18144 ATCCGCTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAATCGGGGCGTTG 18085 Query 18665 ATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTG 18714 | ||||| || | || || || |||||||| |||| | || |||||| Sbjct 18084 AGGAAAATCGGGTACGCCATCTGGATTATGGGGTACAGCTGAACAAACTG 18035 Score = 86.0 bits (94), Expect = 7e-12 Identities = 206/309 (67%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 20067 GCGCGTTACGATACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGT 20126 || ||||| ||| |||||| || || || || ||||||||||| ||| | | Sbjct 16026 GCCCGTTATGATCAACAGAAATATCCGATTTTTGAGCGGTTAATTGAAAAACAGCTCTCT 15967 Query 20127 TTCTTCTGGCGTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTA 20186 || || ||||| || ||||||||||| || | |||||| ||||| || | | || Sbjct 15966 TTTTTTTGGCGCCCAGAAGAGGTTGATGTCTCGCGTGATCGCATCGACTACCAGCAGCTA 15907 Query 20187 CCAGAACATGAAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACC 20246 || |||||| | ||||| |||| | |||| | || || || | | | || ||| | Sbjct 15906 CCTCCTCATGAACAGCATATTTTTATTAGCAATCTAAAATACCAAACCCTGCTGGATTCG 15847 Query 20247 GTTCAGGGACGTGCTCCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACA-CTTGA 20305 |||| || || ||||| |||||| | || | || || || | | ||||| Sbjct 15846 ATTCAAGGGCGCAGCCCTAATGTCGCTTTTTTACCCCTGGTCTC-ACTGCCAGAGCTTGA 15788 Query 20306 CACATGGATTCCTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACAT 20365 || ||||| || ||||| || || || || || ||| ||||| ||||| ||||| Sbjct 15787 AACCTGGATCGAAACTTGGGCCTTTTCAGAAACCATTCACTCCCGTTCCTATACTCACAT 15728 Query 20366 TATGCGCAA 20374 || ||||| Sbjct 15727 CATTCGCAA 15719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582519826796600