Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq7918 127 2e-24 >seq7918 Length=32631 Score = 127 bits (140), Expect = 2e-24 Identities = 275/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 22794 ATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCGACTCGACAGTTTAGTTCA 22853 ||||| |||| ||||| |||||||| ||| |||||| || || || || ||||| || Sbjct 18448 ATTTCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGCTCT 18389 Query 22854 TGCGTTGTTATTGAGGCAGGTGATTCATTAAAGTCTATCAATAAGGCTTCCGC---TTCA 22910 || || | || ||| | ||| ||| | || |||||| || |||| | | Sbjct 18388 TGTGTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAAT---GCCACCGCCAGTGCC 18332 Query 22911 ATTGTTGAATATATCTCTAAACGCGCTGGAATTGGTATTAACGTTGGTATGATTCGTGCC 22970 ||||| |||| ||||| |||| || || ||||| ||||| | || | ||| || ||| Sbjct 18331 ATTGTGAAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCC 18272 Query 22971 GAAGGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAA 23030 ||| ||| || ||||| | ||||| || ||||||||||| ||| Sbjct 18271 TTAGGCAGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTACAAA 18212 Query 23031 CATTTTCAGACTGCTGTTAAATCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACT 23090 ||||| || || || || ||||| || || || ||||| | || || || || ||||| Sbjct 18211 CATTTCCAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTACC 18152 Query 23091 GCTTATTATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAA 23150 | ||||| | |||||| ||||| ||| || | || || ||||| || Sbjct 18151 CTCTTCTATCCGCTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAATCGG 18092 Query 23151 GGTGTAGAAGAAAACCGCATTCGTCATATGGATTATGGTGTTCAACTGAA 23200 || || || ||||| || | || ||| |||||||||| || || ||||| Sbjct 18091 GGCGTTGAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACAGCTGAA 18042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534470457925280