Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq7918 141 1e-28 seq11528 82.4 8e-11 >seq7918 Length=32631 Score = 141 bits (156), Expect = 1e-28 Identities = 272/401 (68%), Gaps = 0/401 (0%) Strand=Plus/Plus Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || |||||||| || ||||| | || ||||| ||||| || |||||| || | Sbjct 18048 TGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAAC 18107 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || | |||| ||||||||| ||||||| | ||||||| | | ||||| || || ||| Sbjct 18108 ACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCG 18167 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGTTTTCCAGAATGGAATA 140361 || | |||||||| || || ||||| || | | | | | ||| | || |||||| Sbjct 18168 CGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAATA 18227 Query 140362 ACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATACATTCCA 140421 ||| |||||| | ||||| ||| ||| ||| || || | | || Sbjct 18228 CAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCG 18287 Query 140422 GCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTTTACTGCA 140481 || |||| |||||||||||||||| || ||||| | || || || ||| Sbjct 18288 GCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCGGTGGCA 18347 Query 140482 TTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGGCGAGTC 140541 || || ||| | |||||| | | || || | || ||||| || || || || || Sbjct 18348 TTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTT 18407 Query 140542 GGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAAT 140582 || ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 18408 GGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 >seq11528 Length=3627 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 67178 TGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTATCC 67237 ||||||||| | | ||||||||| | |||||| ||||||||||||| |||||||| || Sbjct 135 TGGTGGCCCCTCCCCGATTTGAACGGGGGACCAAACGATTATGAGTCGTCTGCTCTAACC 76 Query 67238 ATCTGAGCTAAAGGGCC 67254 | ||||||||| ||||| Sbjct 75 A-CTGAGCTAAGGGGCC 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518402820628120