Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq7918 116 4e-21 >seq7918 Length=32631 Score = 116 bits (128), Expect = 4e-21 Identities = 270/407 (66%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 143920 GTTCATCTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACCTTTGTTGTT 143979 ||||| ||| | || || |||| |||||| | || || || || || || ||||| Sbjct 18041 GTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTT 18100 Query 143980 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 144039 ||| | || | ||| ||| ||||| |||||| | ||||| | ||||| || Sbjct 18101 TTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGC 18160 Query 144040 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAA 144099 || || || | || ||||| || || ||||| || || || ||||||||||| | || Sbjct 18161 TCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAA 18220 Query 144100 TGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAAT 144159 |||||| |||||||| | | || || || ||| | ||| || || || Sbjct 18221 AGGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGAT 18280 Query 144160 CATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGC 144219 | | || | || || |||||||||||||||| ||| | ||||| | || | | || Sbjct 18281 CTTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGC 18340 Query 144220 AGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTG 144279 || || || || | | || | || || | ||||||||| |||||||| Sbjct 18341 GGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTG 18400 Query 144280 ACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAA 144326 ||||||||| ||||| | || |||||||| ||||| || | |||| Sbjct 18401 ACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAA 18447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545356018292040