Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_028927.1
Length=167298
Score E
Sequences producing significant alignments: (Bits) Value
seq7918 132 5e-26
>seq7918
Length=32631
Score = 132 bits (146), Expect = 5e-26
Identities = 276/410 (67%), Gaps = 6/410 (1%)
Strand=Plus/Plus
Query 43562 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTT 43621
||||| || || |||||||||| ||| || | || ||||| || || || || |||
Sbjct 18042 TTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTT 18101
Query 43622 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 43681
|| || || | || ||| ||||| |||||| | ||||| | ||||| ||
Sbjct 18102 TTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCT 18161
Query 43682 CCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 43741
|| || || | || ||||| ||||| ||||| || || || || |||||||| |||||
Sbjct 18162 CCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAA 18221
Query 43742 GGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATC 43801
|||||| || ||||| | ||||| || ||| ||| ||| || |||
Sbjct 18222 GGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATC 18281
Query 43802 ATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGAA---GCG 43858
| || | ||||| ||||| || ||||||| |||| |||| ||||| | | |||
Sbjct 18282 TTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCG 18341
Query 43859 GAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAAC 43918
| || |||||| || | ||| ||| | ||| || | ||||| || |||||
Sbjct 18342 GTGGC---ATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAAT 18398
Query 43919 TGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 43968
|| || || || |||||| ||| |||||||| ||||| || | |||||
Sbjct 18399 TGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535027051373360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |