Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq7918 132 5e-26 >seq7918 Length=32631 Score = 132 bits (146), Expect = 5e-26 Identities = 276/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Plus Query 43562 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTT 43621 ||||| || || |||||||||| ||| || | || ||||| || || || || ||| Sbjct 18042 TTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTT 18101 Query 43622 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 43681 || || || | || ||| ||||| |||||| | ||||| | ||||| || Sbjct 18102 TTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCT 18161 Query 43682 CCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 43741 || || || | || ||||| ||||| ||||| || || || || |||||||| ||||| Sbjct 18162 CCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAA 18221 Query 43742 GGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATC 43801 |||||| || ||||| | ||||| || ||| ||| ||| || ||| Sbjct 18222 GGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATC 18281 Query 43802 ATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGAA---GCG 43858 | || | ||||| ||||| || ||||||| |||| |||| ||||| | | ||| Sbjct 18282 TTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCG 18341 Query 43859 GAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAAC 43918 | || |||||| || | ||| ||| | ||| || | ||||| || ||||| Sbjct 18342 GTGGC---ATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAAT 18398 Query 43919 TGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 43968 || || || || |||||| ||| |||||||| ||||| || | ||||| Sbjct 18399 TGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535027051373360