Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_028995.1 Length=43216 Score E Sequences producing significant alignments: (Bits) Value seq26615 147 6e-31 >seq26615 Length=46094 Score = 147 bits (162), Expect = 6e-31 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 9032 GATATGAAGTTAACTGAATTTTTAGAAAAAATTGGAAATGAAAACTTGAAAATTCAAGTT 9091 || |||| ||||| |||||||||| |||||| || ||||| || | ||||| || Sbjct 8645 GAGATGACATTAACGGAATTTTTAGGAAAAATAGGCAATGAGAATCTAGCTATTCAGATT 8704 Query 9092 TTGCACAATTCAATTGTTTCCGAGAGaaaaacaaaaaaCGATATAGAAATTACATTTGCA 9151 || || | || || | ||||||| |||||| ||| | ||||| ||| | || |||||| Sbjct 8705 TTACATGACTCTGTTATCTCCGAGAAAAAAACCAAAGAAGATATTGAAGTGACTTTTGCA 8764 Query 9152 ACAGAAAATGGTAATTCTCAAATTTTAAGTAAAAGTAATCGTGTTGGTATTGTGGTTTGG 9211 |||||| || ||||| | || | ||| || || ||||| |||||||||||| Sbjct 8765 ACAGAATCCAAAAACACTCAACTATTGGGAAAATCAAAACGAGTTGGCATTGTGGTTTGG 8824 Query 9212 ATGGATGCTGAGAAATACAATGAGGCTATAAAATGA 9247 ||||||||||| || ||||| ||||||||||||||| Sbjct 8825 ATGGATGCTGATAAGTACAACGAGGCTATAAAATGA 8860 Score = 102 bits (112), Expect = 2e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 37759 ATGAAAATGACAAAAGGTGGCTTTGATATATTACGCAAAGCCTTTGGCTCACTTACTCAG 37818 ||||| |||||| |||||| ||| ||||| | || || || || | | | || Sbjct 29991 ATGAAGATGACAGCAGGTGGATTTAATATACTGCGTAATAATTTAGGTCGATTAAACCAA 30050 Query 37819 ACACAAGTGAACGCTATTAATTTCTTAATTGATGAGTTTGACAAAGACAAATCAATCAGC 37878 | ||||| | |||||||| ||| | |||||| || ||||| ||||| || Sbjct 30051 AGCCAAGTTGATCAGATTAATTTTTTAGTATCTGAGTTCGATAAAGATAAATCCATTTCA 30110 Query 37879 TACCCACAAGCATCCTACATGCTTGCTACTACATGGCACGAAACAGCGCGCACGATGCTA 37938 || ||||||||| |||||||||||||||| |||||||| ||||| ||| || ||||| Sbjct 30111 TATCCACAAGCAGCCTACATGCTTGCTACCACATGGCATGAAACTGCGACAACCATGCTG 30170 Query 37939 CCTATCAAGGA 37949 ||||| |||| Sbjct 30171 CCTATTGAGGA 30181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138120907046772