Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq7918 131 2e-25 >seq7918 Length=32631 Score = 131 bits (144), Expect = 2e-25 Identities = 272/405 (67%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 77183 GTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTT 77242 ||| ||||| || ||||||||||| || || | || || | |||||| || ||||| Sbjct 18041 GTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTT 18100 Query 77243 TTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGC 77302 ||| | || | |||| ||| ||||| |||||| | |||||| | | || || || Sbjct 18101 TTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGC 18160 Query 77303 ACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAA 77362 || || || || || ||||| || || ||||| || ||||| || | |||||| | || Sbjct 18161 TCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAA 18220 Query 77363 CGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAAT 77422 || || ||| ||||| | || ||||| || || || || | ||||| || Sbjct 18221 AGGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGAT 18280 Query 77423 GTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGCAGAGGT 77482 | || ||||||| || ||||| || ||||| || | || ||||| || ||| || Sbjct 18281 CTTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGC 18340 Query 77483 TACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTG 77542 ||||| | || | | ||| | | || || | || ||| | ||| || Sbjct 18341 GGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTG 18400 Query 77543 ACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGA 77587 ||| || || ||||| |||||||||||||| || ||||| | ||| Sbjct 18401 ACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGA 18445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568262717612160